Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 6e-19
seq7 100 3e-16
>seq1
Length=2974285
Score = 109 bits (120), Expect = 6e-19
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || |
Sbjct 1361274 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361333
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
| || | | || |||| |||||||||||||| || | || ||||||||| | |||
Sbjct 1361334 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361393
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158
| | |||||||||| ||| | || | |||| ||| | | | ||||| |||||
Sbjct 1361394 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAGGATTCA 1361451
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || | || || ||||| || || | |||||||||||||||||||||
Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || | ||| || | ||| | || |||||||||||||||||| || |
Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
| || | | || |||| |||||||||||||| || | || ||||||||| | |||
Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158
| | |||||||||| ||| | || | |||| | | | | | ||||| |||||
Sbjct 1360710 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CKTTGTCAATAGTGTCAGAGGATTCA 1360767
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | || || ||||| || || | ||||| ||||||||||||||
Sbjct 1360768 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || |
Sbjct 1360818 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1360877
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
| || | | || |||| |||||||||||||| || | || ||||||||| | |||
Sbjct 1360878 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360937
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158
| | |||||||||| ||| | || | |||| | | | | | ||||| |||||
Sbjct 1360938 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCA 1360995
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | || || ||||| || || | ||||| ||||||||||||||
Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 100 bits (110), Expect = 3e-16
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || |
Sbjct 1361046 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361105
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
| || | | || |||| |||||||||||||| || | || ||||||||| | |||
Sbjct 1361106 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361165
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158
| | |||||||||| ||| | || | |||| | | | | | ||||| |||||
Sbjct 1361166 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCA 1361223
Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | || || ||||| || || | ||||| ||||||||||||||
Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
>seq7
Length=860703
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| || | ||||||||| || | || ||||||||| || ||||| ||||
Sbjct 37860 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 37801
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || | ||||||||||| || || | || |||||||| | ||
Sbjct 37800 AAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGG 37741
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | ||||||||| ||| | || | |||| | | | |||||| || ||||
Sbjct 37740 AATACCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 37682
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||| || || || |||| ||||| || || ||||||||
Sbjct 37681 CCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212664196800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |