Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 seq7 100 3e-16 >seq1 Length=2974285 Score = 109 bits (120), Expect = 6e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1361274 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361333 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||| |||||||||||||| || | || ||||||||| | ||| Sbjct 1361334 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361393 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||| | || | |||| ||| | | | ||||| ||||| Sbjct 1361394 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCAATAGTGTCAGAGGATTCA 1361451 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | || || ||||| || || | ||||||||||||||||||||| Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| || | ||| | || |||||||||||||||||| || | Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||| |||||||||||||| || | || ||||||||| | ||| Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| Sbjct 1360710 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CKTTGTCAATAGTGTCAGAGGATTCA 1360767 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1360768 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1360818 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1360877 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||| |||||||||||||| || | || ||||||||| | ||| Sbjct 1360878 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360937 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| Sbjct 1360938 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCA 1360995 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 100 bits (110), Expect = 3e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| || | ||| | ||| |||||| ||||||||||| || | Sbjct 1361046 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361105 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || |||| |||||||||||||| || | || ||||||||| | ||| Sbjct 1361106 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361165 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | |||||||||| ||| | || | |||| | | | | | ||||| ||||| Sbjct 1361166 AATACCCTCCTTGTCC-TGAATCTTGGACTTGA-CRTTGTCAATAGTGTCAGAGGATTCA 1361223 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 >seq7 Length=860703 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||||||||| || | || ||||||||| || ||||| |||| Sbjct 37860 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 37801 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || | ||||||||||| || || | || |||||||| | || Sbjct 37800 AAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGG 37741 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| | || | |||| | | | |||||| || |||| Sbjct 37740 AATACCTTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCA 37682 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||| || || || |||| ||||| || || |||||||| Sbjct 37681 CCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212664196800