Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1 131 1e-25
seq7 107 1e-18
>seq1
Length=2974285
Score = 131 bits (144), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || | |||||| ||||| || ||||| || ||||| || ||
Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTC--TG 1360648
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| | ||||||||||| || |||||| | ||||| | ||| ||||| ||
Sbjct 1360649 ATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1360708
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| ||| ||| || || | || ||||| || ||| |
Sbjct 1360709 GAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAA 1360768
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | |||||| ||||| || |||| || || ||||| |||||||||
Sbjct 1360769 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1360818
Score = 129 bits (142), Expect = 4e-25
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || | |||||| ||||| || || || || ||||| || ||
Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTC--TG 1361332
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| | ||||||||||| || |||||| | ||||| | ||| ||||| ||
Sbjct 1361333 ATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1361392
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| ||| ||| || || | || ||||| || ||| |
Sbjct 1361393 GAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAA 1361452
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | |||||| ||||| || |||| || |||||||| ||||||||
Sbjct 1361453 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501
Score = 127 bits (140), Expect = 1e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || | |||||| ||||| || || || || ||||| || ||
Sbjct 1360819 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTC--TG 1360876
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| | ||||||||||| || |||||| | ||||| | ||| ||||| ||
Sbjct 1360877 ATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1360936
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| ||| ||| || || | || ||||| || ||| |
Sbjct 1360937 GAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1360996
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | |||||| ||||| || |||| || || ||||| |||||||||
Sbjct 1360997 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361046
Score = 127 bits (140), Expect = 1e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || | |||||| ||||| || || || || ||||| || ||
Sbjct 1361047 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTC--TG 1361104
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| | ||||||||||| || |||||| | ||||| | ||| ||||| ||
Sbjct 1361105 ATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTG 1361164
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| || |||||||| ||| ||| || || | || ||||| || ||| |
Sbjct 1361165 GAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1361224
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || | |||||| ||||| || |||| || || ||||| |||||||||
Sbjct 1361225 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361274
>seq7
Length=860703
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || || ||||| ||||| || ||||| |||||||| ||
Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || ||||| || ||||| | ||||| | || ||||| |||
Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||||||||| ||| ||| || ||| | || || || ||| | || ||
Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACC 37680
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| || || ||||| || | || || || |||||||||||
Sbjct 37679 TCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357391912885700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |