Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 217 2e-51 >seq1 Length=2974285 Score = 217 bits (240), Expect = 2e-51 Identities = 899/1402 (64%), Gaps = 31/1402 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||| |||| ||||| || ||||||||||| ||||||||||| ||||||| ||||| Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCC-CTAATGCGTTC 116021 || ||||||||||| || | | | || | | ||| | | ||| || Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTT-TTG 200394 Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCT---TTGTCTCCCCCTCCCACATATCAAACTG 116078 ||| | | ||||||||| | | || | | || | ||||| | ||||||||| Sbjct 200393 CTTTAATGTGTCCCAGTCCCAC---AACTCACTGGGCTTTCTGTCCCAAAGATCAAACTG 200337 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 | | ||| | ||| ||||| || ||||| | | || || | ||||| |||| ||| Sbjct 200336 TAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGC 200277 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 ||||||| || || || | || |||| ||||| || || ||||| || ||||| Sbjct 200276 CAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAA 200217 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 | | | || | | || ||||| | | | | ||||| |||| || | ||| Sbjct 200216 TTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAAACC 200157 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCA-CG 116316 || ||||| | ||||||| | || ||||| ||||| |||| | || ||| | || Sbjct 200156 CTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GCT-TCTGGAACG 200099 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || ||||| || | ||| || | || || | || ||| |||||||| || | |||| Sbjct 200098 GGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCA 200039 Query 116377 TGAAGCTTTTC------GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430 |||||||| || ||| || || | |||| | ||| || ||||| Sbjct 200038 TGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGT 199979 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| ||||| |||| |||||| | ||| || | |||||| Sbjct 199978 GCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCA 199919 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 ||||||||| ||| || ||| ||||||||||||||||| | ||| | || || Sbjct 199918 CAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCAT 199859 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||| ||||| | ||| |||| || || || || ||||| | || | ||| || | | Sbjct 199858 GCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTAC 199799 Query 116611 CAT-ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 ||| | || | | || | | ||| | | || || |||||||| ||| Sbjct 199798 CATAATTTCTGAGCCTTG-ATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTA 199740 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 | ||||||||||| ||||| | | || || | ||| | |||| || ||| |||| Sbjct 199739 CAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAA 199680 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 | | ||| | | || || |||||| | |||||| || | ||| || ||||| | || Sbjct 199679 CAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGC 199620 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 | ||| | ||| | | |||||| | || ||||| | | || | || Sbjct 199619 TGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAA 199560 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCG 116903 || | ||||||||||||||| ||||||| || | || | || || | ||| Sbjct 199559 ATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTT--- 199503 Query 116904 ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963 | |||| |||| | || || | || || || || || | || ||| |||||||| Sbjct 199502 ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGAT 199443 Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGGA 117022 ||||| ||| || || || || ||| | || | | | | | | ||| | Sbjct 199442 ACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAG-TCGAGCGAATGTTGTGTA 199384 Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082 |||| | ||||||||| || || | ||| || || || || | | | | | | Sbjct 199383 TGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCAT 199324 Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142 | || || || || || ||| | || | || || | ||||| |||||||| || Sbjct 199323 AAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGT 199264 Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCT 117202 | ||||||||||| || || | || || | ||||| | || | ||||||||| Sbjct 199263 TGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCA 199204 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 ||| ||| || || | ||| ||||||||| || || |||||||| || | || | || Sbjct 199203 TATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCA 199144 Query 117263 TAAACATGTATTGGGGTGTTTC 117284 ||| | || || ||| |||| Sbjct 199143 TAATTAAGTGCTGAGGTCTTTC 199122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507046623200