Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1 217 2e-51
>seq1
Length=2974285
Score = 217 bits (240), Expect = 2e-51
Identities = 899/1402 (64%), Gaps = 31/1402 (2%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||| |||| ||||| || ||||||||||| ||||||||||| ||||||| |||||
Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCC-CTAATGCGTTC 116021
|| ||||||||||| || | | | || | | ||| | | ||| ||
Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTT-TTG 200394
Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCT---TTGTCTCCCCCTCCCACATATCAAACTG 116078
||| | | ||||||||| | | || | | || | ||||| | |||||||||
Sbjct 200393 CTTTAATGTGTCCCAGTCCCAC---AACTCACTGGGCTTTCTGTCCCAAAGATCAAACTG 200337
Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138
| | ||| | ||| ||||| || ||||| | | || || | ||||| |||| |||
Sbjct 200336 TAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGC 200277
Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198
||||||| || || || | || |||| ||||| || || ||||| || |||||
Sbjct 200276 CAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAA 200217
Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258
| | | || | | || ||||| | | | | ||||| |||| || | |||
Sbjct 200216 TTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAAACC 200157
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCA-CG 116316
|| ||||| | ||||||| | || ||||| ||||| |||| | || ||| | ||
Sbjct 200156 CTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GCT-TCTGGAACG 200099
Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376
|| ||||| || | ||| || | || || | || ||| |||||||| || | ||||
Sbjct 200098 GGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCA 200039
Query 116377 TGAAGCTTTTC------GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430
|||||||| || ||| || || | |||| | ||| || |||||
Sbjct 200038 TGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGT 199979
Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490
||||| || |||| ||||| |||| |||||| | ||| || | ||||||
Sbjct 199978 GCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCA 199919
Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550
||||||||| ||| || ||| ||||||||||||||||| | ||| | || ||
Sbjct 199918 CAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCAT 199859
Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610
||||| ||||| | ||| |||| || || || || ||||| | || | ||| || | |
Sbjct 199858 GCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTAC 199799
Query 116611 CAT-ACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669
||| | || | | || | | ||| | | || || |||||||| |||
Sbjct 199798 CATAATTTCTGAGCCTTG-ATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTA 199740
Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729
| ||||||||||| ||||| | | || || | ||| | |||| || ||| ||||
Sbjct 199739 CAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAA 199680
Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789
| | ||| | | || || |||||| | |||||| || | ||| || ||||| | ||
Sbjct 199679 CAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGC 199620
Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849
| ||| | ||| | | |||||| | || ||||| | | || | ||
Sbjct 199619 TGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAA 199560
Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCG 116903
|| | ||||||||||||||| ||||||| || | || | || || | |||
Sbjct 199559 ATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTT--- 199503
Query 116904 ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGAT 116963
| |||| |||| | || || | || || || || || | || ||| ||||||||
Sbjct 199502 ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGAT 199443
Query 116964 ACCATCAGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGGA 117022
||||| ||| || || || || ||| | || | | | | | | ||| |
Sbjct 199442 ACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAG-TCGAGCGAATGTTGTGTA 199384
Query 117023 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGT 117082
|||| | ||||||||| || || | ||| || || || || | | | | | |
Sbjct 199383 TGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCAT 199324
Query 117083 AGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCC 117142
| || || || || || ||| | || | || || | ||||| |||||||| ||
Sbjct 199323 AAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGT 199264
Query 117143 TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCT 117202
| ||||||||||| || || | || || | ||||| | || | |||||||||
Sbjct 199263 TGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCA 199204
Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262
||| ||| || || | ||| ||||||||| || || |||||||| || | || | ||
Sbjct 199203 TATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCA 199144
Query 117263 TAAACATGTATTGGGGTGTTTC 117284
||| | || || ||| ||||
Sbjct 199143 TAATTAAGTGCTGAGGTCTTTC 199122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613507046623200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |