Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7 100 7e-16 seq1 93.3 1e-13 >seq7 Length=860703 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | ||| ||||| ||||||||||||| ||||||||||| | ||| | || Sbjct 37848 TCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCC 37789 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || |||| ||||| || || || || | | |||||||| || ||| ||||| Sbjct 37788 GTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTT 37729 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| || || | |||||| | | || || || | ||||| Sbjct 37728 GTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 37669 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | || || || |||||||| Sbjct 37668 AGTCTTACCGGTTAAGGTCTTGACGAAAATTTG 37636 >seq1 Length=2974285 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||||| || || || ||||||||||| | |||||||| | || || ||||| Sbjct 1360602 TCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCC 1360661 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || ||||| || | | ||||||||| || ||| || || Sbjct 1360662 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1360721 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| || || | ||||| | | ||| || || | || || Sbjct 1360722 GTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1360781 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || || ||||| ||||| Sbjct 1360782 AGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1360814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||||| || || || |||||||| || | |||||||| | || || || || Sbjct 1361286 TCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCC 1361345 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || ||||| || | | ||||||||| || ||| || || Sbjct 1361346 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1361405 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| ||| || | ||||| | | ||| || || | || || Sbjct 1361406 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1361465 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || || ||||| ||||| Sbjct 1361466 AGTTTTTCCAGTCAAGGTCTTTACAAAGATTTG 1361498 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||||| || || || |||||||| || | |||||||| | || || || || Sbjct 1360830 TCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCC 1360889 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||| || ||||| || | | ||||||||| || ||| || || Sbjct 1360890 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1360949 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| || || | ||||| | | ||| || || | || || Sbjct 1360950 GTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1361009 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || || ||||| ||||| Sbjct 1361010 AGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1361042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921297901340