Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq7 100 7e-16
seq1 93.3 1e-13
>seq7
Length=860703
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| || | ||| ||||| ||||||||||||| ||||||||||| | ||| | ||
Sbjct 37848 TCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCC 37789
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|| |||| ||||| || || || || | | |||||||| || ||| |||||
Sbjct 37788 GTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTT 37729
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| || || | |||||| | | || || || | |||||
Sbjct 37728 GTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 37669
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||| || | || || || ||||||||
Sbjct 37668 AGTCTTACCGGTTAAGGTCTTGACGAAAATTTG 37636
>seq1
Length=2974285
Score = 93.3 bits (102), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||||| || || || ||||||||||| | |||||||| | || || |||||
Sbjct 1360602 TCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCC 1360661
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|||||| | ||||| || ||||| || | | ||||||||| || ||| || ||
Sbjct 1360662 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1360721
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| || || | ||||| | | ||| || || | || ||
Sbjct 1360722 GTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1360781
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || | || || ||||| |||||
Sbjct 1360782 AGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1360814
Score = 87.8 bits (96), Expect = 4e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||||| || || || |||||||| || | |||||||| | || || || ||
Sbjct 1361286 TCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCC 1361345
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|||||| | ||||| || ||||| || | | ||||||||| || ||| || ||
Sbjct 1361346 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1361405
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | ||||| | | ||| || || | || ||
Sbjct 1361406 GTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1361465
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || | || || ||||| |||||
Sbjct 1361466 AGTTTTTCCAGTCAAGGTCTTTACAAAGATTTG 1361498
Score = 84.2 bits (92), Expect = 5e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||||| ||||| || || || |||||||| || | |||||||| | || || || ||
Sbjct 1360830 TCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCC 1360889
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
|||||| | ||||| || ||||| || | | ||||||||| || ||| || ||
Sbjct 1360890 ATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTT 1360949
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| || || | ||||| | | ||| || || | || ||
Sbjct 1360950 GTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAAT 1361009
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || | || || ||||| |||||
Sbjct 1361010 AGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1361042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921297901340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |