Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 161 1e-34
seq7 89.7 5e-13
>seq1
Length=2974285
Score = 161 bits (178), Expect = 1e-34
Identities = 416/630 (66%), Gaps = 9/630 (1%)
Strand=Plus/Minus
Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944
||| | |||||||||||| ||| ||||| ||||| || | | | || | ||||||
Sbjct 233037 GAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGA 232978
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004
||||||||| || ||||| | ||| | || || | |||||| |||| || || ||
Sbjct 232977 GAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCC 232918
Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064
||||| | || || || || || || || || || || ||||| || ||| ||
Sbjct 232917 ACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTC 232858
Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124
| ||||||||| | ||||| || ||||| | ||||| ||| || || || ||
Sbjct 232857 GTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTC 232798
Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGT 133184
|| || || || ||| | | ||| | | | | ||||||||||| |
Sbjct 232797 AATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAA 232738
Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244
|| || | || ||||| | || ||||| |||||| || ||||||||||| ||
Sbjct 232737 GGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGC 232678
Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304
|| | ||| || || || ||| ||| |||| || ||||| || || || ||
Sbjct 232677 TTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATC 232618
Query 133305 GCTGGCGGCGAAAAAGGCC--AGCACGTG-CTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361
| || |||||||| ||| | ||| | ||| |||| |||||||||||||||||
Sbjct 232617 GGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAA---CGCTCGTTGTCGTTCAA 232561
Query 133362 GCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGA 133418
||| | |||||| | ||||| || || || | ||||| | |||||||| ||
Sbjct 232560 GCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGA 232501
Query 133419 CGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAA 133478
|| || ||||| |||||||| ||| || || |||| || || |||| |||||
Sbjct 232500 TGCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441
Query 133479 CCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
|| || | ||| || ||| || |||||
Sbjct 232440 ACGACGAGTGTTCTCCTTCAAAAGAGGCTC 232411
>seq7
Length=860703
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || || || || |||||| | || || ||| | ||
Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| || || |||||| | |||||
Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| | | |||| || || || || |||| |||| || || || |||||||||
Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||||| | || || || |||||| || | |||||||| ||
Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 37859
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172674956800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |