Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4 203 1e-46 seq5 132 2e-25 seq1 131 7e-25 >seq4 Length=1642203 Score = 203 bits (224), Expect = 1e-46 Identities = 769/1181 (65%), Gaps = 48/1181 (4%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| | || || | |||||||| || |||||||||||||| ||| | |||||||| Sbjct 897124 GTTACTCACGCCGTGGTCACTGTTCCTGCGTATTTCAATGATGCTCAAAGACAAGCAACC 897183 Query 451373 AAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || || || || ||| |||||||| || ||||| | ||||| ||||||| || || || Sbjct 897184 AAGGACGCCGGTACA-ATTGCTGGGTTGAATGTGTTGAGAATTGTTAATGAGCCCACTGC 897242 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAG 451490 |||||| | || || ||| ||| | |||| | | ||||| | || | | Sbjct 897243 AGCTGCAATTGCCTACGGATTAG-------ACAAGACCGATGGTGAAAAGCAGATCATTG 897295 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA--ATTGAAGATGGGGT 451548 | | || || |||||||| || |||| |||| | ||| | ||||||| || || Sbjct 897296 TTTACGACTTGGGTGGAGGTACCTTTGATGTTTCTCT--TTTGAGCATTGAAGGCGGTGT 897353 Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGC 451608 ||||| || | || || |||||| |||||| | |||||||||||| ||||| || Sbjct 897354 TTTTGAGGTCAGAGCCACTTCTGGTGACACTCATTTGGGAGGTGAAGATTTTGATT-TGA 897412 Query 451609 A-ATTGT--GGAATGGTTGAAAACTGATGTTCAAC--GAAAACTAAAAGTAGATATTTCT 451663 | ||||| | || | ||| || ||||| ||| ||| || | ||||| || Sbjct 897413 AGATTGTCCGCCATTTGTCTAAATTG---TTCAAGAAGAAGACTGGAATT-GATATCACT 897468 Query 451664 ACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACT- 451722 || || ||| || ||||| | || |||||||| || | | || Sbjct 897469 GGCAATGCCAAGGCATTTTCCAAGCTTAAGAGTGAGGCTGAAAAAGCCAAGAGAGCTCTT 897528 Query 451723 -CAGTTCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATG 451781 ||| |||| || | | || || | |||||| || || |||| | ||| | Sbjct 897529 TCAGCTCAATCCATAG--CCAGAATTGAAATTGATTCATTTGTCAATGGTGTTGATCTTT 897586 Query 451782 CTACTACTCTTACCCGTGCTAAATTTGAATCAATT---TGTTCCAGTATTTTTGCACGGG 451838 | |||||| | | ||||| |||||| |||| | | || |||| | | Sbjct 897587 CCGAAACTCTTTCTAGAGCTAAGTTTGAAG-AATTGAATATGGAAGCATTTAAGAAGACT 897645 Query 451839 TAATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATG 451898 | |||| |||||||| || || || | ||| | || || | || | ||||||||| Sbjct 897646 T--TGAAGCCTGTTGAACAGGTTTTGAAGGATGCCAACATGAAGAAGTCTGAAATTGATG 897703 Query 451899 AAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTT 451958 | ||||| ||||| || ||||| || |||| || || ||||||| | ||| | Sbjct 897704 ACATTGTACTTGTGGGTGGTTCCACCAGAATCCCCAAGGTTCAAGAGTTATTGGAGAAGT 897763 Query 451959 ATTTTGGAGGAAAACAA--CTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGG 452016 |||| || | ||| || || | ||| | | || |||||||| || || || ||||| Sbjct 897764 -TTTTCGACGGAAAGAAGGCT-TCCAAGGGTATCAACCCTGATGAGGCAGTGGCTTATGG 897821 Query 452017 TGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCT 452076 |||||| |||||||| | | || | | ||| || | || | | ||||||| | Sbjct 897822 TGCTGCTGTTCAAGCTGGTGTTTTGGCTGGTGAAGCGGGTG------TTGAAGATATTGT 897875 Query 452077 GTTAGTAGATGT-AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135 ||| | ||||| ||| ||| | | ||||| ||||||| ||||||| | ||||||| Sbjct 897876 ATTATTGGATGTCAACCCCTTGACC-CTTGGTATTGAAACCACTGGTGGTGTCATGACTA 897934 Query 452136 ATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAA 452195 || ||||| || ||| |||||||| || || || | || ||| || Sbjct 897935 CCTTGATTAACAGAAACACTGCTATTCCTACCAAGAAATCCCAGATTTTCTCTACTGCTG 897994 Query 452196 GTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGA-CACGA 452254 ||||||||| || ||| |||||||| | |||||| ||||||||| || || | Sbjct 897995 CTGATAACCAGCCCACAGTATTGATTCAAGTTTATGAAGGTGAACGTGCATTGGTCAAG- 898053 Query 452255 GATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACT 452314 || || || | | | || | ||| | | |||||||||| || | || | Sbjct 898054 GACAACAACAGATTGGGTAAGTTTGAGTTGACTGGCATTCCTCCTGCTCCTCGTGGTGTT 898113 Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 ||||||||||| |||||| | | ||||| |||||||||||||| || || | Sbjct 898114 CCTCAAATTGAGGTTACCTTTTCCTTAGATGCCAATGGTATTCTTAAGGTTGAAGCCATG 898173 Query 452375 GAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434 || || |||| || ||||| ||||| || || ||||| || | ||| | Sbjct 898174 GATAAGGGTACTGGTAAGTCAGAGTCTATTACCATCACAAATGACAAGGGTAGATTAACC 898233 Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATT 452475 || || || ||||| ||||| || ||||| || || || Sbjct 898234 AAGGATGAAATTGACCGTATGGTTGAGGAAGCTGAGAAGTT 898274 >seq5 Length=1501106 Score = 132 bits (146), Expect = 2e-25 Identities = 303/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Plus Query 502359 AAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTACATCTCAA 502418 |||| |||| ||||| ||| || ||||| ||||| || || |||||||| ||| Sbjct 762566 AAATTTGGATTAAGAAATTCTTTACTAGTAGCACCTATGCCTACGGCCTCTACATCGCAA 762625 Query 502419 CTATTAGGCAATT--ATGAATCATTTGAACCATTTACTTCTAATATATATACTAGAAGAA 502476 |||| || ||| |||||| |||||||| | ||||| |||||||||| ||| || Sbjct 762626 ATATTGGG--ATTCAATGAATGCTTTGAACCCTACACTTCCAATATATATAACAGACGAG 762683 Query 502477 CTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATGAAATCG 502536 ||| | ||||||| |||||| |||||| ||||||| || ||||||| ||| | | Sbjct 762684 TGTTATCTGGTGAATACCAAGTTGTGAATAAATATTTAATGAAAGATTTGATTGATTTGG 762743 Query 502537 GTGAATGGACTAATGAAATTAGACAAA-AAGTAATTAATGATAATGGTTCTATTCAAAAT 502595 || |||| ||| || | || || | ||| ||| || || |||||||||||| Sbjct 762744 GTTTGTGGAACC-TGACCATAAAAAACCAATTGATTGTTGACAACGGGTCTATTCAAAAT 762802 Query 502596 ATATT-ACTA--CCTAATATAATTAAAAACATCTATCAAACTTCATATGAAATGAAACAA 502652 || | | || || | | || ||||| | ||| ||||| | ||||| ||| Sbjct 762803 ATTTCCAGTATTCCACAGAGTATCAAAAATTTGTATAAAACTGTTTGGGAAATTCCCCAA 762862 Query 502653 AAATATATAATAGAT--GGATGTTCTATACGGGGAGCTTATATAGATCAAACCCAATCTA 502710 ||| ||||||||| || || | | | |||| || ||| || ||| || || Sbjct 762863 AAAGTCATAATAGATATGGCTGCTG-ACAGAGGGAAGTT-TATTGACCAACTGCAGAGTA 762920 Query 502711 TGAATCTTTATTTTGCACAACCAGACTCTCAA-AAATTAACTTCCTCTCAATTTTATGCA 502769 ||||| ||||||| || |||| ||| | |||||||| | || ||||||||| Sbjct 762921 TGAATATTTATTTA-CAAAACCCAACTTTTGGTAAATTAACCAGTTGCCACTTTTATGCA 762979 Query 502770 TGGGAACAAGGATTAAAAACAGG 502792 ||||| |||| || |||||||| Sbjct 762980 TGGGAGAAAGGGTTGAAAACAGG 763002 Score = 123 bits (136), Expect = 1e-22 Identities = 197/281 (70%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388 |||| ||||| || ||||| |||||||||||| | ||||| || ||| | ||||| | Sbjct 1226013 TTACGGTTCCAGCATATTTTAATGATGCACAAAGACAAGCTACCAAAAACGCAGGGAAAC 1225954 Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448 ||| || || || |||||| || ||||||| || || || || || |||||||| |||| Sbjct 1225953 TTGTGGGCTTGAACGTTCTTAGAGTTATTAACGAGCCCACTGCTGCAGCTCTAGCGTATG 1225894 Query 451449 GACTAGGAAAA--TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | | | ||| ||||||| | | | | || || ||||||||||| || Sbjct 1225893 GTATTGACAAACGTCAAAAGGA--TGGCGTA------GTTGCCGTTTTTGATTTTGGAGG 1225842 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || ||||| ||| | | |||||||| ||||| |||||||| || || Sbjct 1225841 CGGCACCTTTGATATTTCGATTTTAGATATTGAAGACGGGGTTTTTGAAGTTCGAGCCAC 1225782 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATG 451607 |||||| |||||||| | || || || ||| |||||||| Sbjct 1225781 AAATGGTAATACTCATTTGGGTGGCGAGGATTGTGATAATG 1225741 >seq1 Length=2974285 Score = 131 bits (144), Expect = 7e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| ||||||||||| ||||| |||||||| ||| Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || || ||||| || ||||| || ||||| || || || Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || || ||| | |||||||| ||||| || | || || ||| Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | |||||||| | ||||| ||| ||||||| Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1360822 Score = 131 bits (144), Expect = 7e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| ||||||||||| ||||| |||||||| ||| Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || || ||||| || ||||| || ||||| || || || Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || || ||| | |||||||| ||||| || | || || ||| Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | |||||||| | ||||| ||| ||||||| Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1361050 Score = 131 bits (144), Expect = 7e-25 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||| ||||||||||| ||||| |||||||| || Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||||| | || || ||||| || ||||| || ||||| || || || Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | || |||||| | || || ||| | |||||||| ||||| || | || || || Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 |||| | ||||| | |||||||| | ||||| ||| ||||||| Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1361278 Score = 129 bits (142), Expect = 2e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| ||||||||||| ||||| |||||||| ||| Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | || || ||||| || ||||| || ||||| || || || Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || || ||| | |||||||||||||| || | || || ||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || ||||| | ||||| ||| ||||||| Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGG 1360594 Score = 114 bits (126), Expect = 5e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 ||||| |||||||| || | |||||||||| |||| |||||| ||||| ||||| ||| Sbjct 811270 GTAAAAACAACAGTCTTAGCCGGCATATTTAACCCAATAGAAAATGTTTCTGTTGCAAAC 811329 Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 || ||||||| || || ||| | |||| | |||| |||||||||||||||||||| Sbjct 811330 AATACTTTAAGCAAACCTTCTTGGAACAAGA-TCTCAATAATTTCTTTTAAAATAGGAAG 811388 Query 420927 TATACCAGAATGATG 420941 || |||||| ||||| Sbjct 811389 TAAACCAGAGTGATG 811403 Score = 98.7 bits (108), Expect = 4e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 363753 AAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGGA-TTATATTT 363811 ||||||| ||||| || | |||||| |||||||||| |||||||| |||| ||| Sbjct 1617984 AAACTAGTTGATGCAAACAGAGCAGGTACAAAAGATGGAGATAAATGTACTCTTAT-TTT 1617926 Query 363812 AGCAGAGGGAGATTCTGCTCTTTCTATGATTCTGTCAGGGTTATCAAGTAAAGATAGAAA 363871 | |||||||||||||||| | || || | | ||||||| | || || |||| | Sbjct 1617925 AACAGAGGGAGATTCTGCGTTATCATTGGCTGTTGCAGGGTTGGCTGTTATAGGTAGAGA 1617866 Query 363872 TTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAAGC 363922 || |||||| ||||| |||| ||| || ||| | ||||| |||||||| Sbjct 1617865 TTATTATGGCTGTTTTCCTTTAAGAGGTAAGTTACTCAATGTCAGAGAAGC 1617815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717893722160