Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq4 203 1e-46
seq5 132 2e-25
seq1 131 7e-25
>seq4
Length=1642203
Score = 203 bits (224), Expect = 1e-46
Identities = 769/1181 (65%), Gaps = 48/1181 (4%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| | || || | |||||||| || |||||||||||||| ||| | ||||||||
Sbjct 897124 GTTACTCACGCCGTGGTCACTGTTCCTGCGTATTTCAATGATGCTCAAAGACAAGCAACC 897183
Query 451373 AAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|| || || || ||| |||||||| || ||||| | ||||| ||||||| || || ||
Sbjct 897184 AAGGACGCCGGTACA-ATTGCTGGGTTGAATGTGTTGAGAATTGTTAATGAGCCCACTGC 897242
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAG 451490
|||||| | || || ||| ||| | |||| | | ||||| | || | |
Sbjct 897243 AGCTGCAATTGCCTACGGATTAG-------ACAAGACCGATGGTGAAAAGCAGATCATTG 897295
Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA--ATTGAAGATGGGGT 451548
| | || || |||||||| || |||| |||| | ||| | ||||||| || ||
Sbjct 897296 TTTACGACTTGGGTGGAGGTACCTTTGATGTTTCTCT--TTTGAGCATTGAAGGCGGTGT 897353
Query 451549 ATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGC 451608
||||| || | || || |||||| |||||| | |||||||||||| ||||| ||
Sbjct 897354 TTTTGAGGTCAGAGCCACTTCTGGTGACACTCATTTGGGAGGTGAAGATTTTGATT-TGA 897412
Query 451609 A-ATTGT--GGAATGGTTGAAAACTGATGTTCAAC--GAAAACTAAAAGTAGATATTTCT 451663
| ||||| | || | ||| || ||||| ||| ||| || | ||||| ||
Sbjct 897413 AGATTGTCCGCCATTTGTCTAAATTG---TTCAAGAAGAAGACTGGAATT-GATATCACT 897468
Query 451664 ACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACT- 451722
|| || ||| || ||||| | || |||||||| || | | ||
Sbjct 897469 GGCAATGCCAAGGCATTTTCCAAGCTTAAGAGTGAGGCTGAAAAAGCCAAGAGAGCTCTT 897528
Query 451723 -CAGTTCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATG 451781
||| |||| || | | || || | |||||| || || |||| | ||| |
Sbjct 897529 TCAGCTCAATCCATAG--CCAGAATTGAAATTGATTCATTTGTCAATGGTGTTGATCTTT 897586
Query 451782 CTACTACTCTTACCCGTGCTAAATTTGAATCAATT---TGTTCCAGTATTTTTGCACGGG 451838
| |||||| | | ||||| |||||| |||| | | || |||| | |
Sbjct 897587 CCGAAACTCTTTCTAGAGCTAAGTTTGAAG-AATTGAATATGGAAGCATTTAAGAAGACT 897645
Query 451839 TAATGAAACCTGTTGATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATG 451898
| |||| |||||||| || || || | ||| | || || | || | |||||||||
Sbjct 897646 T--TGAAGCCTGTTGAACAGGTTTTGAAGGATGCCAACATGAAGAAGTCTGAAATTGATG 897703
Query 451899 AAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTT 451958
| ||||| ||||| || ||||| || |||| || || ||||||| | ||| |
Sbjct 897704 ACATTGTACTTGTGGGTGGTTCCACCAGAATCCCCAAGGTTCAAGAGTTATTGGAGAAGT 897763
Query 451959 ATTTTGGAGGAAAACAA--CTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGG 452016
|||| || | ||| || || | ||| | | || |||||||| || || || |||||
Sbjct 897764 -TTTTCGACGGAAAGAAGGCT-TCCAAGGGTATCAACCCTGATGAGGCAGTGGCTTATGG 897821
Query 452017 TGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATTCT 452076
|||||| |||||||| | | || | | ||| || | || | | ||||||| |
Sbjct 897822 TGCTGCTGTTCAAGCTGGTGTTTTGGCTGGTGAAGCGGGTG------TTGAAGATATTGT 897875
Query 452077 GTTAGTAGATGT-AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTA 452135
||| | ||||| ||| ||| | | ||||| ||||||| ||||||| | |||||||
Sbjct 897876 ATTATTGGATGTCAACCCCTTGACC-CTTGGTATTGAAACCACTGGTGGTGTCATGACTA 897934
Query 452136 ATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAA 452195
|| ||||| || ||| |||||||| || || || | || ||| ||
Sbjct 897935 CCTTGATTAACAGAAACACTGCTATTCCTACCAAGAAATCCCAGATTTTCTCTACTGCTG 897994
Query 452196 GTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGA-CACGA 452254
||||||||| || ||| |||||||| | |||||| ||||||||| || || |
Sbjct 897995 CTGATAACCAGCCCACAGTATTGATTCAAGTTTATGAAGGTGAACGTGCATTGGTCAAG- 898053
Query 452255 GATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACT 452314
|| || || | | | || | ||| | | |||||||||| || | || |
Sbjct 898054 GACAACAACAGATTGGGTAAGTTTGAGTTGACTGGCATTCCTCCTGCTCCTCGTGGTGTT 898113
Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374
||||||||||| |||||| | | ||||| |||||||||||||| || || |
Sbjct 898114 CCTCAAATTGAGGTTACCTTTTCCTTAGATGCCAATGGTATTCTTAAGGTTGAAGCCATG 898173
Query 452375 GAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434
|| || |||| || ||||| ||||| || || ||||| || | ||| |
Sbjct 898174 GATAAGGGTACTGGTAAGTCAGAGTCTATTACCATCACAAATGACAAGGGTAGATTAACC 898233
Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATT 452475
|| || || ||||| ||||| || ||||| || || ||
Sbjct 898234 AAGGATGAAATTGACCGTATGGTTGAGGAAGCTGAGAAGTT 898274
>seq5
Length=1501106
Score = 132 bits (146), Expect = 2e-25
Identities = 303/443 (68%), Gaps = 15/443 (3%)
Strand=Plus/Plus
Query 502359 AAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTACATCTCAA 502418
|||| |||| ||||| ||| || ||||| ||||| || || |||||||| |||
Sbjct 762566 AAATTTGGATTAAGAAATTCTTTACTAGTAGCACCTATGCCTACGGCCTCTACATCGCAA 762625
Query 502419 CTATTAGGCAATT--ATGAATCATTTGAACCATTTACTTCTAATATATATACTAGAAGAA 502476
|||| || ||| |||||| |||||||| | ||||| |||||||||| ||| ||
Sbjct 762626 ATATTGGG--ATTCAATGAATGCTTTGAACCCTACACTTCCAATATATATAACAGACGAG 762683
Query 502477 CTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATGAAATCG 502536
||| | ||||||| |||||| |||||| ||||||| || ||||||| ||| | |
Sbjct 762684 TGTTATCTGGTGAATACCAAGTTGTGAATAAATATTTAATGAAAGATTTGATTGATTTGG 762743
Query 502537 GTGAATGGACTAATGAAATTAGACAAA-AAGTAATTAATGATAATGGTTCTATTCAAAAT 502595
|| |||| ||| || | || || | ||| ||| || || ||||||||||||
Sbjct 762744 GTTTGTGGAACC-TGACCATAAAAAACCAATTGATTGTTGACAACGGGTCTATTCAAAAT 762802
Query 502596 ATATT-ACTA--CCTAATATAATTAAAAACATCTATCAAACTTCATATGAAATGAAACAA 502652
|| | | || || | | || ||||| | ||| ||||| | ||||| |||
Sbjct 762803 ATTTCCAGTATTCCACAGAGTATCAAAAATTTGTATAAAACTGTTTGGGAAATTCCCCAA 762862
Query 502653 AAATATATAATAGAT--GGATGTTCTATACGGGGAGCTTATATAGATCAAACCCAATCTA 502710
||| ||||||||| || || | | | |||| || ||| || ||| || ||
Sbjct 762863 AAAGTCATAATAGATATGGCTGCTG-ACAGAGGGAAGTT-TATTGACCAACTGCAGAGTA 762920
Query 502711 TGAATCTTTATTTTGCACAACCAGACTCTCAA-AAATTAACTTCCTCTCAATTTTATGCA 502769
||||| ||||||| || |||| ||| | |||||||| | || |||||||||
Sbjct 762921 TGAATATTTATTTA-CAAAACCCAACTTTTGGTAAATTAACCAGTTGCCACTTTTATGCA 762979
Query 502770 TGGGAACAAGGATTAAAAACAGG 502792
||||| |||| || ||||||||
Sbjct 762980 TGGGAGAAAGGGTTGAAAACAGG 763002
Score = 123 bits (136), Expect = 1e-22
Identities = 197/281 (70%), Gaps = 10/281 (4%)
Strand=Plus/Minus
Query 451329 TTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATA 451388
|||| ||||| || ||||| |||||||||||| | ||||| || ||| | ||||| |
Sbjct 1226013 TTACGGTTCCAGCATATTTTAATGATGCACAAAGACAAGCTACCAAAAACGCAGGGAAAC 1225954
Query 451389 TTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATG 451448
||| || || || |||||| || ||||||| || || || || || |||||||| ||||
Sbjct 1225953 TTGTGGGCTTGAACGTTCTTAGAGTTATTAACGAGCCCACTGCTGCAGCTCTAGCGTATG 1225894
Query 451449 GACTAGGAAAA--TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506
| | | ||| ||||||| | | | | || || ||||||||||| ||
Sbjct 1225893 GTATTGACAAACGTCAAAAGGA--TGGCGTA------GTTGCCGTTTTTGATTTTGGAGG 1225842
Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566
|| || ||||| ||| | | |||||||| ||||| |||||||| || ||
Sbjct 1225841 CGGCACCTTTGATATTTCGATTTTAGATATTGAAGACGGGGTTTTTGAAGTTCGAGCCAC 1225782
Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATG 451607
|||||| |||||||| | || || || ||| ||||||||
Sbjct 1225781 AAATGGTAATACTCATTTGGGTGGCGAGGATTGTGATAATG 1225741
>seq1
Length=2974285
Score = 131 bits (144), Expect = 7e-25
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| ||||||||||| ||||| |||||||| |||
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||| | || || ||||| || ||||| || ||||| || || ||
Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | || |||||| | || || ||| | |||||||| ||||| || | || || |||
Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
||| | ||||| | |||||||| | ||||| ||| |||||||
Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1360822
Score = 131 bits (144), Expect = 7e-25
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| ||||||||||| ||||| |||||||| |||
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||| | || || ||||| || ||||| || ||||| || || ||
Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | || |||||| | || || ||| | |||||||| ||||| || | || || |||
Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
||| | ||||| | |||||||| | ||||| ||| |||||||
Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1361050
Score = 131 bits (144), Expect = 7e-25
Identities = 164/225 (73%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || || ||||||| ||||||||||| ||||| |||||||| ||
Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||| | ||||| | || || ||||| || ||||| || ||||| || || ||
Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
|| | || |||||| | || || ||| | |||||||| ||||| || | || || ||
Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
|||| | ||||| | |||||||| | ||||| ||| |||||||
Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGG 1361278
Score = 129 bits (142), Expect = 2e-24
Identities = 163/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || || ||||||| ||||||||||| ||||| |||||||| |||
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | ||||| | || || ||||| || ||||| || ||||| || || ||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | || |||||| | || || ||| | |||||||||||||| || | || || |||
Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273
||| | ||||| | || ||||| | ||||| ||| |||||||
Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGG 1360594
Score = 114 bits (126), Expect = 5e-20
Identities = 108/135 (80%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867
||||| |||||||| || | |||||||||| |||| |||||| ||||| ||||| |||
Sbjct 811270 GTAAAAACAACAGTCTTAGCCGGCATATTTAACCCAATAGAAAATGTTTCTGTTGCAAAC 811329
Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926
|| ||||||| || || ||| | |||| | |||| ||||||||||||||||||||
Sbjct 811330 AATACTTTAAGCAAACCTTCTTGGAACAAGA-TCTCAATAATTTCTTTTAAAATAGGAAG 811388
Query 420927 TATACCAGAATGATG 420941
|| |||||| |||||
Sbjct 811389 TAAACCAGAGTGATG 811403
Score = 98.7 bits (108), Expect = 4e-15
Identities = 126/171 (74%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 363753 AAACTAGAAGATGCTAATAAAGCAGGAACAAAAGATGCTCATAAATGTGGA-TTATATTT 363811
||||||| ||||| || | |||||| |||||||||| |||||||| |||| |||
Sbjct 1617984 AAACTAGTTGATGCAAACAGAGCAGGTACAAAAGATGGAGATAAATGTACTCTTAT-TTT 1617926
Query 363812 AGCAGAGGGAGATTCTGCTCTTTCTATGATTCTGTCAGGGTTATCAAGTAAAGATAGAAA 363871
| |||||||||||||||| | || || | | ||||||| | || || |||| |
Sbjct 1617925 AACAGAGGGAGATTCTGCGTTATCATTGGCTGTTGCAGGGTTGGCTGTTATAGGTAGAGA 1617866
Query 363872 TTTTTATGGTGCCTTTCCGTTAAAAGGAAAATTATTAAATGTAAGAGAAGC 363922
|| |||||| ||||| |||| ||| || ||| | ||||| ||||||||
Sbjct 1617865 TTATTATGGCTGTTTTCCTTTAAGAGGTAAGTTACTCAATGTCAGAGAAGC 1617815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975717893722160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |