Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 221 1e-52 >seq1 Length=2974285 Score = 221 bits (244), Expect = 1e-52 Identities = 1112/1752 (63%), Gaps = 51/1752 (3%) Strand=Plus/Plus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || ||| || | | ||| | || || || ||||| ||||| || || ||| Sbjct 199122 GAAAGACCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTCCC 199181 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 || | || || ||| | | |||||||| | || | ||||| | || || Sbjct 199182 AGAGTCATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTACT 199241 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 | || || ||||||||||| | || ||||||||| || || | ||||| | || Sbjct 199242 TTGTTTAATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGAAA 199301 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || ||||| || | || ||||| | || | | ||||||| || || ||| | Sbjct 199302 GATGATTCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGAGT 199361 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGG 111904 ||||| ||||| || | ||||| || | | | | | | || | ||| || Sbjct 199362 GCTGGAGGTATTGGTTTACACATACACAACATTCGCTCGA-CTGGTGCCTACATTGCTGG 199420 Query 111905 TACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 111964 ||| || ||| || ||||||| ||||| ||| || | || || || ||| || || Sbjct 199421 TACCAACGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTCG 199480 Query 111965 CTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTATCGCAGTC------TATCTTGAGCC 112018 || || | || | ||| | ||| || | ||| | ||| | || || Sbjct 199481 TTACGTGGATCAGGGTGGTAAT---AAGAGACCCGGTGCATTTGCCTTATATTTGGAACC 199537 Query 112019 ATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGC 112078 |||||||||||||||| | || ||| | || | | || || ||| | || || Sbjct 199538 ATGGCACGCGGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAAT 199597 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 | || | ||| | ||| | || | |||||||| || | || |||||||||||||| Sbjct 199598 GAGGGCAAGAGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTGA 199657 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | ||| || | ||| | | || | ||| | |||| | ||| | ||||||| Sbjct 199658 GCAGAATGCTGAGTGGACCTTGTTCTCTCCTAATGAGGCCCAAGGTTTGTCCGATGTTTA 199717 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGAC 112258 ||||| |||||||| || | ||| |||||||| |||| || | | ||| Sbjct 199718 CGGTGATGAGTTTGAGGCATTGTACGAGAAGTACGAACGTGAAAACCGTGGAAGAAAGAC 199777 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | ||| | | ||| | || ||| | || | |||||||| || ||||| || Sbjct 199778 TATCAAGGCTCAGAAATTATGGTACGCCATTTTGGAGGCGCAAACCGAAACCGGTACCCC 199837 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 || ||| | |||||||| || || || |||| | |||||||||||| |||||||| || Sbjct 199838 ATTCATGTTGTACAAAGATGCATGCAATAAAAAAACTAATCAAAAGAACTTGGGTGTCAT 199897 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 ||| |||||| | ||| ||||| | |||| | ||||||| ||||| Sbjct 199898 CAAATCTTCCAATTTGTGTTGTGAAATTGTCGAATACTCCTCGCCAGATGAGGTTGCTGT 199957 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTG 112497 |||||| | ||||| ||||| || ||| || ||| || ||| | ||| || | || Sbjct 199958 ATGTAACTTGGCATCTATCGCACTTCCCTCGTTTGTTGAAAAAGACAGCAACAACTTGTG 200017 Query 112498 -----ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | | ||| || || || |||||||| || ||| || ||| | |||||| | Sbjct 200018 GTACAACTTTGAGAAGCTTCATGAAGTTACCAAGGTTGTTACCCGTAACTTGAACAGAAT 200077 Query 112553 TATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 |||||| | || |||||||||||| ||| || | |||||| ||||| | | | Sbjct 200078 CATTGATCGTAACTTTTACCCCGTTCCAGA-AGCCAAAAGATCTAACATGAGGAATAGAC 200136 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTG---TCGCCACGCA 112667 |||||| | ||||| || ||| | || |||| || || | ||| | || | Sbjct 200137 CAATTGCATTGGGTGTGCAGGGTTTGGCAGATGCTTTTATGGCATTGAGATTGC----CC 200192 Query 112668 TTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCC 112727 ||||| || | |||| | ||| | ||| | || || || || ||||| |||| Sbjct 200193 TTTGACTCGCAACAAGCTAGAGAATTGAATATTCAGATTTTCGAAACCATGTACCACGGT 200252 Query 112728 GCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 || | || || ||| || ||||| |||| || ||| | || |||| | ||||| Sbjct 200253 GCAGTGGAAGCCAGTATCGAATTGGCGCAGGTCGAGGGTTCTTACGAAAGTTACGAGGGG 200312 Query 112788 TCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---AGCT 112843 |||||||| || |||||| || | || |||||| | ||||| | || ||| || | Sbjct 200313 TCTCCAGCCTC-CAAGGGTTTGTTACAGTTTGATCTTTGGGACAGAAAGCCCAGTGAGTT 200371 Query 112844 TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 112903 | ||||||||| | | ||| || | || | ||| || | || | Sbjct 200372 ---GTGGGACTGGGACACATTAAAGCAAAAATTGGCTAAGCATGGTATTAGAAATTCGTT 200428 Query 112904 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 112963 ||| | || || ||||| || || ||||| | ||||| |||||||| || || ||||| Sbjct 200429 ATTGGTTGCTCCCATGCCCACGGCATCCACTTCCCAAATATTGGGTAACAACGAGTGCTT 200488 Query 112964 TGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGT 113023 |||||||||||| | || ||||| |||||| | || || || || ||||| Sbjct 200489 TGAACCCTACACTTCCAATATCTACTCCAGAAGAGTATTGGCTGGTGAATTCCAAATTGT 200548 Query 113024 CAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 |||| || | | || || || | ||| ||||| | | |||||| | Sbjct 200549 CAACCCTTATTTGTTACGCGATCTTGTGGATTTGGGTATCTGGAACGACTCCATGAAGAA 200608 Query 113084 TCTCATGGT----GAAAGCGGGTGGTTCCATTCAAAATATTG-TGGATATTCCAGATGAA 113138 ||| | | | | ||||| | || | | ||| | || || || ||| Sbjct 200609 CAACATCATTTCCAACAAC----GGTTCGA-TCCAGCTGTTGCCCAACATCCCTGACGAA 200663 Query 113139 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCC 113198 | ||| ||||||| || || ||||||||| ||| | | ||||| ||||| Sbjct 200664 GTCAAGGCGTTGTACAAGACCGTATGGGAAATCTCTCAGAAACACATTATTGATATGGCT 200723 Query 113199 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGA--ATCTA-TTCATGGAAAGT 113255 ||||| |||| ||||||||||||| || | ||| ||| | ||| ||| | Sbjct 200724 GCAGACCGTGCCGCCTTCATTGATCAATCCCAGTCTTTGAACATCCACATCAAGGA---T 200780 Query 113256 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 113315 || || ||| || | | || ||||| | ||| ||||||||||||| |||||||| Sbjct 200781 CCTACAATGGGTAAATTAACCTCGATGCATTTTTACGGTTGGAAGAAGGGACTCAAAACA 200840 Query 113316 GGGATGTATTAC 113327 || ||||| ||| Sbjct 200841 GGTATGTACTAC 200852 Score = 109 bits (120), Expect = 7e-19 Identities = 216/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 15969 TTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTC 16028 || ||||| |||||||| || || | ||| || | || | ||| | ||||||||| Sbjct 422396 TTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATTG 422337 Query 16029 GCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 | ||| |||| | | || ||||| | |||||||||||||||| |||| | Sbjct 422336 CCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGATG 422277 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| || | || ||||| || ||| | ||| ||||| || || || ||| Sbjct 422276 ATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAACA 422217 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 |||||||||||||||||||| | || | ||| | | || || || || |||| Sbjct 422216 CCAACAAACATCTCCACAAATTCTGATCCCGAAACTGACAAAAATGGAACGCCAGCTTCA 422157 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || ||| | ||| || | ||||||||| || ||||| || ||||| | | ||| Sbjct 422156 CCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAGCA 422097 Query 16269 CCTCGTGGAATCTTGGCGCC 16288 |||| |||||||||||| || Sbjct 422096 CCTCTTGGAATCTTGGCACC 422077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742244814400