Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 315 8e-81 >seq1 Length=2974285 Score = 315 bits (348), Expect = 8e-81 Identities = 987/1516 (65%), Gaps = 37/1516 (2%) Strand=Plus/Minus Query 109726 AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCA 109785 ||||||||||| | | | || | |||||| || | ||||||||||| || ||||| Sbjct 200539 AATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCACTCG 200480 Query 109786 TTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTT 109845 ||||| || | ||||| | |||||| || |||||||||||||| | | | ||| Sbjct 200479 TTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAATTT 200420 Query 109846 CGGAGACCCTTCGTCTTTACCCGCTCACGCATT---GCGTCCCAATCATAACGACCACTA 109902 | | ||| | | || || | || || | |||||| || | || ||| Sbjct 200419 CTAATACCATGC---TTAGCCAATTTTTGCTTTAATGTGTCCCAGTC----CCACAACTC 200367 Query 109903 AATTTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCC 109962 | | | || | ||||| | ||| || | | ||||| | || ||||| ||| Sbjct 200366 ACTG--GGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCC 200309 Query 109963 TTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCA 110022 | | |||| ||||| || ||||| |||| ||||| ||| || || | ||| | Sbjct 200308 TCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCG 200249 Query 110023 TGATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGA 110082 || ||||| || || ||||| ||| ||||| | || | || |||| ||||| Sbjct 200248 TGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCAAAGGGC 200189 Query 110083 AGACCACAAAGA-ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATG 110141 | | | ||| | ||||| |||| || | |||||| ||||| | |||| || | || Sbjct 200188 A-ATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATT 200130 Query 110142 CTTCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCG 110198 | |||||||||| | | || |||| |||||||||||||| || || |||| | Sbjct 200129 CCTCATGTTAGATCTTTTGGC---TTCTGGAACGGGGTAAAAGTTACGATCAATGATTCT 200073 Query 110199 ATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC----- 110253 || | || || ||| ||| || | |||||| || || || | | | || Sbjct 200072 GTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACCACAA 200013 Query 110254 GTTTTCG-TCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGA 110312 ||| | | | || || | ||| | ||| || || ||||| || | || || |||| Sbjct 200012 GTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGC 199953 Query 110313 AGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGAC 110372 | ||| ||| || |||||| | |||||| |||||| |||||| || ||||| Sbjct 199952 AACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGAC 199893 Query 110373 ACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGT 110432 |||||||||||| ||||| | ||| ||||||||||| || || | |||| ||||||| Sbjct 199892 ACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGT 199833 Query 110433 ACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGC 110492 ||| ||||| || || | || | |||||| | ||||| | || || ||| Sbjct 199832 ACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTCTT 199773 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 | | | ||| |||||||| |||||| ||||||| || | ||||| || Sbjct 199772 TCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCGTAAAC 199713 Query 110553 ATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAAC 110612 ||| || | ||| | |||| | ||| |||| | || ||| | || || |||||| Sbjct 199712 ATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAAC 199653 Query 110613 CCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTC 110672 |||||||| |||| |||||||||||||| || | ||| | || | | || Sbjct 199652 TCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTC 199593 Query 110673 TTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTC 110732 ||| | ||| || || | | || | || || | |||||||| |||||||||||| Sbjct 199592 TTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTC 199533 Query 110733 GAGAT---AGACA---GCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGC 110786 | || || || || || || |||| || || |||| | || || || || Sbjct 199532 CAAATATAAGGCAAATGCACCGGGTCTCTTATTACCAC---CCTGATCCACGTAACGAGC 199476 Query 110787 TGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCT 110846 ||| |||||| || || | ||||||||| || |||| || ||| || ||||| Sbjct 199475 AGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGC 199416 Query 110847 AATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 ||| || | | | ||||||| ||| || || | ||||||||| || || | ||| Sbjct 199415 AATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTCTT 199356 Query 110907 ACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 ||| ||||| ||| | | ||| |||||||||| ||||| ||||| | || Sbjct 199355 GGAAATCAAGGCACATGTCT-TCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCA 199297 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 | ||||| | |||||| || ||||| ||||| || || || ||||| || | |||| Sbjct 199296 TAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTAG 199237 Query 111026 GTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTA 111085 | | | || | || | | ||||||||| | ||||| || || | | ||| | Sbjct 199236 GCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAA 199177 Query 111086 CATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTA 111145 || | ||| ||||||||||||||||||| ||| | | | ||||| |||| | Sbjct 199176 TGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCGA 199117 Query 111146 GCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAA 111205 || |||| || | ||||||| |||||| || |||| ||||||||| Sbjct 199116 CTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAAGTAATTGT 199057 Query 111206 AATCGAAATCACGATC 111221 | | ||||||||||| Sbjct 199056 AGTTAAAATCACGATC 199041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975852756000