Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 237 2e-57 >seq1 Length=2974285 Score = 237 bits (262), Expect = 2e-57 Identities = 942/1463 (64%), Gaps = 31/1463 (2%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 ||||| || | ||||||||||||||||| || || |||||||| ||||| | ||||| Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCC--TTGATGC 106049 || || ||||| || || | ||| | || | || ||| ||| || || ||| Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGC 200393 Query 106050 GTTCCTTGAGAACATCCCAGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAA 106107 || | | | |||||||| | | | || || || | ||||| | |||||| Sbjct 200392 TTTAAT-GTG----TCCCAGTCCCACAACTCA-CTGGGCTTT-CTGTCCCAAAGATCAAA 200340 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 || | || || | ||| | ||||| ||||| | | || || ||||| | | | | Sbjct 200339 CTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTG 200280 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 |||||||| || || |||| | |||| ||||||||||| || || || ||| Sbjct 200279 CGCCAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATT 200220 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 || || | |||| | || ||||| | | | | ||||| |||| || | Sbjct 200219 CAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAA 200160 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CA 106345 ||| || |||||||| |||| ||||| | | ||| ||||| |||| | || ||| | Sbjct 200159 ACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GC-TTCTGGA 200102 Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405 ||||| ||||| || | ||||||| || ||| | || |||||||| ||| || | | Sbjct 200101 ACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACT 200042 Query 106406 TCATGAAGTTTTTCATA-----ATCAAAAG-TGCGAGTCTCTTCATTGACATACTTTGGA 106459 |||||||| || ||| | | || ||| || | |||| | ||| || ||| Sbjct 200041 TCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGA 199982 Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519 || ||||| |||||||| || || ||||| |||||| | ||| || | |||| Sbjct 199981 AGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATT 199922 Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579 || |||||| |||||| || || ||||| |||||||| ||| | ||||| ||| Sbjct 199921 TCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTG 199862 Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639 || ||||| ||||| | |||| | || || || || || || || | || | ||| || Sbjct 199861 CATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCG 199802 Query 106640 TTCCA-CACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 106698 | ||| | || | | || | | | | | | || || |||||||| Sbjct 199801 TACCATAATTTCTGAGCCTTG-ATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTC 199743 Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758 ||| | || |||||||| ||||| | ||||| | |||| | |||| | ||| | Sbjct 199742 GTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGA 199683 Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818 ||| | | ||| | | || || |||||| | |||||| || | ||| |||||||||| Sbjct 199682 GAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAA 199623 Query 106819 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878 | || || | |||||| || ||||| | ||| || || || | || | Sbjct 199622 TGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGAT 199563 Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---G 106935 ||| || | |||||||||||||||||| || | ||| | || | | || || Sbjct 199562 GAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTT 199503 Query 106936 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995 | ||| | |||| || || || || ||| || || || | || ||| ||||| || Sbjct 199502 ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGAT 199443 Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055 ||||| || ||| || || || ||| | | | | | | | || || Sbjct 199442 ACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTAT 199383 Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115 ||| | |||||||| ||||| | ||| || || ||||| | | | || |||| Sbjct 199382 GTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATA 199323 Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175 ||||||| || || || || || | || || | ||||| |||||| || || | Sbjct 199322 AATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTT 199263 Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235 |||||||||||||| || | || || | |||| | || | ||||||||| | Sbjct 199262 GGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCAT 199203 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 | ||| || || | ||| |||||| || || || || || ||||| || | ||| Sbjct 199202 ATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCAT 199143 Query 107296 AAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCT 107354 || | || || ||| |||| || |||||| | | | ||| | || || ||| Sbjct 199142 AATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATC-TCT 199084 Query 107355 CAAGGGTTTTGAGACCAAAGTAA 107377 | | ||||||| |||||||||| Sbjct 199083 CTAAAGTTTTGAAACCAAAGTAA 199061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 212/321 (66%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 9275 ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT 9334 ||| ||||| |||||||| || || | || || | || | ||| | ||||||||| Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338 Query 9335 CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 | ||| |||| | | || ||||| | |||||||||||||||| |||| Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278 Query 9395 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || | || || || ||| ||| | |||||| || | || || || Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||||||||||||||||||||| | || | ||| | | || || || || ||| Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGAAACTGACAAAAATGGAACGCCAGCTTC 422158 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| ||| | ||| || | ||||||||| || ||||| || ||||| | | || Sbjct 422157 ACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAGC 422098 Query 9575 ACCCCGTGGAATCTTGGCGCC 9595 ||| | |||||||||||| || Sbjct 422097 ACCTCTTGGAATCTTGGCACC 422077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980652504800