Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 237 2e-57
>seq1
Length=2974285
Score = 237 bits (262), Expect = 2e-57
Identities = 942/1463 (64%), Gaps = 31/1463 (2%)
Strand=Plus/Minus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
||||| || | ||||||||||||||||| || || |||||||| ||||| | |||||
Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC---CTTTTCC--TTGATGC 106049
|| || ||||| || || | ||| | || | || ||| ||| || || |||
Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGC 200393
Query 106050 GTTCCTTGAGAACATCCCAGTCGTAGT--TGAGCTTGGTTTCACCTTCCCACATATCAAA 106107
|| | | | |||||||| | | | || || || | ||||| | ||||||
Sbjct 200392 TTTAAT-GTG----TCCCAGTCCCACAACTCA-CTGGGCTTT-CTGTCCCAAAGATCAAA 200340
Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167
|| | || || | ||| | ||||| ||||| | | || || ||||| | | | |
Sbjct 200339 CTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTG 200280
Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227
|||||||| || || |||| | |||| ||||||||||| || || || |||
Sbjct 200279 CGCCAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATT 200220
Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287
|| || | |||| | || ||||| | | | | ||||| |||| || |
Sbjct 200219 CAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAA 200160
Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CA 106345
||| || |||||||| |||| ||||| | | ||| ||||| |||| | || ||| |
Sbjct 200159 ACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GC-TTCTGGA 200102
Query 106346 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 106405
||||| ||||| || | ||||||| || ||| | || |||||||| ||| || | |
Sbjct 200101 ACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACT 200042
Query 106406 TCATGAAGTTTTTCATA-----ATCAAAAG-TGCGAGTCTCTTCATTGACATACTTTGGA 106459
|||||||| || ||| | | || ||| || | |||| | ||| || |||
Sbjct 200041 TCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGA 199982
Query 106460 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATT 106519
|| ||||| |||||||| || || ||||| |||||| | ||| || | ||||
Sbjct 199981 AGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATT 199922
Query 106520 TCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG 106579
|| |||||| |||||| || || ||||| |||||||| ||| | ||||| |||
Sbjct 199921 TCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTG 199862
Query 106580 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCC 106639
|| ||||| ||||| | |||| | || || || || || || || | || | ||| ||
Sbjct 199861 CATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCG 199802
Query 106640 TTCCA-CACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGT 106698
| ||| | || | | || | | | | | | || || ||||||||
Sbjct 199801 TACCATAATTTCTGAGCCTTG-ATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTC 199743
Query 106699 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 106758
||| | || |||||||| ||||| | ||||| | |||| | |||| | ||| |
Sbjct 199742 GTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGA 199683
Query 106759 GAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 106818
||| | | ||| | | || || |||||| | |||||| || | ||| ||||||||||
Sbjct 199682 GAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAA 199623
Query 106819 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 106878
| || || | |||||| || ||||| | ||| || || || | || |
Sbjct 199622 TGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGAT 199563
Query 106879 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC---G 106935
||| || | |||||||||||||||||| || | ||| | || | | || ||
Sbjct 199562 GAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTT 199503
Query 106936 ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAAT 106995
| ||| | |||| || || || || ||| || || || | || ||| ||||| ||
Sbjct 199502 ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGAT 199443
Query 106996 ACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGAT 107055
||||| || ||| || || || ||| | | | | | | | || ||
Sbjct 199442 ACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTAT 199383
Query 107056 GTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATA 107115
||| | |||||||| ||||| | ||| || || ||||| | | | || ||||
Sbjct 199382 GTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATA 199323
Query 107116 GATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCT 107175
||||||| || || || || || | || || | ||||| |||||| || || |
Sbjct 199322 AATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTT 199263
Query 107176 TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTT 107235
|||||||||||||| || | || || | |||| | || | ||||||||| |
Sbjct 199262 GGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCAT 199203
Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295
| ||| || || | ||| |||||| || || || || || ||||| || | |||
Sbjct 199202 ATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCAT 199143
Query 107296 AAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCT 107354
|| | || || ||| |||| || |||||| | | | ||| | || || |||
Sbjct 199142 AATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATC-TCT 199084
Query 107355 CAAGGGTTTTGAGACCAAAGTAA 107377
| | ||||||| ||||||||||
Sbjct 199083 CTAAAGTTTTGAAACCAAAGTAA 199061
Score = 87.8 bits (96), Expect = 2e-12
Identities = 212/321 (66%), Gaps = 0/321 (0%)
Strand=Plus/Minus
Query 9275 ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT 9334
||| ||||| |||||||| || || | || || | || | ||| | |||||||||
Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338
Query 9335 CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394
| ||| |||| | | || ||||| | |||||||||||||||| ||||
Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278
Query 9395 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454
|| || | || || || ||| ||| | |||||| || | || || ||
Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218
Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514
||||||||||||||||||||| | || | ||| | | || || || || |||
Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGAAACTGACAAAAATGGAACGCCAGCTTC 422158
Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574
||| ||| | ||| || | ||||||||| || ||||| || ||||| | | ||
Sbjct 422157 ACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAGC 422098
Query 9575 ACCCCGTGGAATCTTGGCGCC 9595
||| | |||||||||||| ||
Sbjct 422097 ACCTCTTGGAATCTTGGCACC 422077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980652504800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |