Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 246 3e-60 seq5 205 1e-47 >seq1 Length=2974285 Score = 246 bits (272), Expect = 3e-60 Identities = 583/879 (66%), Gaps = 5/879 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || |||||| ||||| || || || || ||||| | || || || | Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||| ||||| | ||||| || | |||| | |||||| | | ||| Sbjct 233258 TCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAATGCGACAAGT 233199 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | ||| || || ||||| | | || | ||||| | ||| ||||| || | || Sbjct 233198 AATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAACAAC 233139 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || ||| | ||||| || | ||| || | ||| ||| || ||||||| ||||| Sbjct 233138 GAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATAATC 233079 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA 18969 | || || | ||| || || | | | || || | ||| || |||||| Sbjct 233078 TTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAAGCAAGCAAAA 233019 Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029 || || | ||||| || | | || || || || || || || |||||||||||| Sbjct 233018 TCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCAGGCATC 232959 Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089 | ||||| || || ||||| || || || ||||| |||||| ||||| |||||||| Sbjct 232958 AAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATACCTTCA 232899 Query 19090 ACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTC 19149 || || ||||| ||||| || | ||| ||| | || || | || | ||||| Sbjct 232898 ACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATCCAGCGT 232839 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| |||||||||||||| | || || || ||||| |||| ||| |||| | | Sbjct 232838 AAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTGAATAAAAAG 232779 Query 19210 ATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGA 19269 ||| | | || || | ||| | || ||||| || ||| | ||||| || Sbjct 232778 TCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTAGGTCTCTGAGTGG 232719 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 |||||||| || || || || |||||||| ||| | ||||||| ||||| || || Sbjct 232718 ATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGGAATCTGAACCTCG 232659 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 | | || | || ||||| || || ||||| || ||||| ||| || |||||||| Sbjct 232658 GCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGCAGCGAAAAATGCC 232599 Query 19390 AATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCAATCATTAAT 19445 || | | | ||| || || | || ||| | | | ||||| |||| | | Sbjct 232598 AAAATACGGGAAATGAAGAAACGCTCGT-TGTCGTTCAAGCGATTGTTCCAGTCATGAGT 232540 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||||| ||||| | ||| || | ||||||||||| || |||||||| || ||||| Sbjct 232539 GTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGCTTTCTTGTACAT 232480 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| || || | |||| ||||| || | |||||| Sbjct 232479 TTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441 Score = 232 bits (256), Expect = 8e-56 Identities = 616/934 (66%), Gaps = 14/934 (1%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 |||||| |||||||| | ||||||||||| ||||||| ||| | |||| | || Sbjct 199982 AAGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAAT 199923 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 |||| ||| | ||| | ||||||| |||||| || | |||||| | || || Sbjct 199922 TTCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATT 199863 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||||| || ||||| | ||| || || || || ||||| | || | || | || | Sbjct 199862 GCATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGC 199803 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | || |||||| ||| ||| | || ||| ||||||| || Sbjct 199802 GTACCATAATTTCTGAGCCTTGATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTC 199743 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTCATTAGGAC 48174 || || |||||| ||||| || || |||| | |||| || | | |||||||| Sbjct 199742 GTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCT-CATTAGGAG 199684 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | ||| | ||| || ||| | | ||||| ||||||| | || || ||||| | Sbjct 199683 AGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACA 199624 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAA 48294 ||| || ||||| || | || | |||||| || ||| |||| || ||| || | Sbjct 199623 ATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGA 199564 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 || || | ||||| || ||||||||||| ||||||| || | | |||| |||| | Sbjct 199563 TGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCT 199504 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 ||||||| || ||||| | || | ||||| || || ||||||| | ||| || | | Sbjct 199503 TATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGA 199444 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT-ACTA 48473 ||||||| || |||| ||||| || | ||| || ||| | | | || || || Sbjct 199443 TACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTA 199384 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| ||||| || || | || || || | ||||| || | ||||||| Sbjct 199383 TGTGTAA-ACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCA 199325 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA-GACATTTGCGG 48592 ||||| || || ||| ||||||| ||||| ||| |||| || | |||||||| || Sbjct 199324 TAAATACCGTCAATAGAATCATCTTTCATA-GCAATCAAAAAGCACGAGGACATTTGAGG 199266 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAA 48652 | || || | |||||| || || || || | || |||| | ||| || | Sbjct 199265 GTTGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACAT 199206 Query 48653 CAATTTATATGTTTCAATAACAGAATCT----ATATCCCATTGATGTATACCTATAGATA 48708 || || || |||||||| || ||| || || ||| ||||| || | | Sbjct 199205 CATATTGTAAGTTTCAAT----GACTCTGGGAATGTCGTCACCATGAATACCAATGGCAA 199150 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 | | ||| | | | ||||||||||| | | |||| ||| ||| | ||||| || | Sbjct 199149 CTCTCATAATTAAGTGCTGAGGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAG 199090 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 || | || || ||||| |||||||| || ||||| Sbjct 199089 ATCTCTCTAAAGTTTTGAAACCAAAGTAATTGTA 199056 Score = 93.3 bits (102), Expect = 5e-14 Identities = 192/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 48927 TTTTTTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 ||| | |||| ||| || | ||||| | || ||||| || || || |||||||||||| Sbjct 198904 TTTGTAGTTTGTTTGTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCT 198845 Query 48987 GGATGAATTGTTGTACATGTACTAGATATT-TCTGCTGCTAATATATCTAATTCTTTAGT 49045 || || || || || |||||| | | | ||||||||||| |||| | || |||| Sbjct 198844 GGGTGGATAGTAGT-CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGT 198786 Query 49046 AGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTT--ACTGGATCTATA 49103 || |||||| || | ||| ||||||| | ||| |||| || | ||| | Sbjct 198785 GGTAACACCTTGGTACACACCTGAAATAACTCT--TTGAGTGATTTGCACGGCATCAACG 198728 Query 49104 TGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACATT 49163 |||| || | |||||||||||| | | || ||||| |||||||||||||| Sbjct 198727 TGATTGGAGTCTAAGCCATAACATAATCTCTGTACTCTAGCAGTAATTTTATCAAAACGG 198668 Query 49164 ATATTCTCTTTACGACCGTCACGTTTTATAACAAACATCTT 49204 | | |||||| ||||| | | ||| | ||| |||| || Sbjct 198667 ACAGGCTCTTTGCGACCATGTCTTTTAACCACATACATTTT 198627 >seq5 Length=1501106 Score = 205 bits (226), Expect = 1e-47 Identities = 463/688 (67%), Gaps = 16/688 (2%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||||||| |||| ||||| || || || || ||||||||| ||||| || | Sbjct 761898 TATAACTTGACAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAA 761839 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | ||||||||| || || | || ||||| |||| |||| ||| | |||||| || Sbjct 761838 AACAATGACCATTCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGT 761779 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTCAAG 48295 | ||||||||| || |||| | ||||| ||||| ||| | ||||| || | Sbjct 761778 CCATAAAATAAATCTCTGGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGT 761719 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 | | || | ||||||| ||||||||| || | |||| ||| | ||||||||| Sbjct 761718 ACA-TCGAATATATCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCG 761660 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 | ||||||||||||| | |||||| ||||| | || | |||| ||||| || | || Sbjct 761659 ACTACCTCCTTGATCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTAT 761600 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 ||| ||||| | ||||| | | | || || |||| || | | | |||| ||| Sbjct 761599 TCCAGTTGATGTTCCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAAT 761540 Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 || || ||||| ||||| | |||||| || |||||| | | | || | | Sbjct 761539 ATGTAA-GCCTATTCCACCAGATCCTTTAGAAATAAGAGCAGTCTTGTGCAAAGTTTTGT 761481 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 | ||||| || ||| ||||||| ||| || ||||| ||| ||| | | || Sbjct 761480 ATATTCCGTCAATAGAATCATCTTCCATTGCCAAAAGAAAGCAAGAAGAAA---GAAAAT 761424 Query 48595 GACA---AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | |||||||| ||| | | || || || ||||||||||| | | | ||| | Sbjct 761423 TAAAATCAGTTCCTGCGTTATAGAGAGTGGGTGAAGCATGAATAAAATACCTTTTTGACA 761364 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTA---TATCCCATTGATGTATACCTATAGATA 48708 | | |||||||||| |||| | || | || | ||| || || || | | Sbjct 761363 TGAGGTCATATGTTTCAGCAACATCTTTTAAGTTTTCGC---CATGAATGCCAATTGCCA 761307 Query 48709 CACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATG 48768 | | || |||||| |||||||| ||||| |||||| | || |||||||||||||||| Sbjct 761306 CCCTCAAAAACATAAATTGAGGTGTTTCAGCAATTTCATCATCAATTTTCAAAAGATATG 761247 Query 48769 ATTTTTCCAATGTTTTAAAACCAAAATA 48796 | |||| ||||||||||| ||||| || Sbjct 761246 ACTTTTGCAATGTTTTAACTCCAAAGTA 761219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108659472800