Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 >seq1 Length=2974285 Score = 127 bits (140), Expect = 2e-24 Identities = 478/740 (65%), Gaps = 16/740 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||| || || | ||||| |||||||||| || ||||||||| | Sbjct 233331 CATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGC 233272 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | || || ||||||||||| ||||| ||||||| ||| || | | | || Sbjct 233271 CAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT-TCGTTGC 233213 Query 36992 -TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 |||| | || | || || |||||||| || | ||| | ||||| | || | ||| Sbjct 233212 CTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGT 233153 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | ||||| | | | || | ||||| |||| || | |||| | || || Sbjct 233152 TCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTT-CAATAGCAACG 233094 Query 37110 GCATCTTTAACTATATTA---ACAATAACTTCTTCAGTTGGGGGATATTTT--AAATATT 37164 || ||| | | || || |||||| | | || ||| | |||| || | Sbjct 233093 GCCTCTGTGATAATCTTCTCGACAATAGCAGCATC-----GGGTCTGTTTTGCAAGTGGG 233039 Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || || || || |||||||| || ||||| ||||| | | || || || || | Sbjct 233038 AGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGG 232979 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 | || || || || ||||| || ||||| || || | |||||| || | |||||| |||| Sbjct 232978 AGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATC 232919 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 || ||||||||||||||||| || |||||||| ||||||||| | | ||| | | Sbjct 232918 CACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGT-TCGCCAAATAAGGCC 232860 Query 37345 T-ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTT 37403 | | |||| ||||| | | ||| || ||||| ||| | || ||| || Sbjct 232859 TCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTC 232800 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 ||||| || || || | ||||| | || | || | ||||| || || || | Sbjct 232799 TCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAAC 232740 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 || || | || ||||| |||||||| || || || ||||| ||||| || | Sbjct 232739 AAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTG 232680 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCA 37583 ||||| | | ||||| ||| | | || ||| | ||||| || ||||| || ||| Sbjct 232679 GCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCA 232620 Query 37584 TCACTAGCTGCAAAGAAAGC 37603 || ||| || || || || Sbjct 232619 TCGGAAGCAGCGAAAAATGC 232600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316651920800