Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 100 2e-16
>seq1
Length=2974285
Score = 100 bits (110), Expect = 2e-16
Identities = 154/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| || | ||| || || ||| || ||||||||||| || |||| ||| | ||
Sbjct 1361289 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361348
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || |||||||| || || |||| || ||| || || | |||| |||||||||||
Sbjct 1361349 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361408
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| || || | | || || || | || ||||| | ||||| ||
Sbjct 1361409 CTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361468
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773
|||||| ||||| || |||||||| || ||||| ||||||
Sbjct 1361469 TTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTGTGT 1361508
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| || | ||| ||||| ||| |||||||||||||| || |||| ||| | ||
Sbjct 1360605 CAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATC 1360664
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || |||||||| || || |||| || ||| || || | |||| |||||||||||
Sbjct 1360665 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360724
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| || || | | || || || | || ||||| | ||||| ||
Sbjct 1360725 CTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1360784
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||| || || ||||| || |||||
Sbjct 1360785 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| || | ||| || || ||| || ||||||||||| || |||| ||| | ||
Sbjct 1360833 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1360892
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || |||||||| || || |||| || ||| || || | |||| |||||||||||
Sbjct 1360893 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1360952
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| || || | | || || || | || ||||| | ||||| ||
Sbjct 1360953 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361012
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||| || || ||||| || |||||
Sbjct 1361013 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
||| || | ||| || || ||| || ||||||||||| || |||| ||| | ||
Sbjct 1361061 CAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATC 1361120
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|| || |||||||| || || |||| || ||| || || | |||| |||||||||||
Sbjct 1361121 TTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTC 1361180
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
|||||| || || | | || || || | || ||||| | ||||| ||
Sbjct 1361181 CTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGT 1361240
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||| ||||| || || ||||| || |||||
Sbjct 1361241 TTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937507146460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |