Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 147 4e-30 >seq1 Length=2974285 Score = 147 bits (162), Expect = 4e-30 Identities = 547/857 (64%), Gaps = 16/857 (2%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | ||||||||||| || || || ||||| || || || || ||| Sbjct 232468 GAGATTTGGCAAATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGAT 232527 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 ||| || |||| | | |||| || || | || ||| | ||| ||| ||| Sbjct 232528 TTGGGAAAAGACACTCATGACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCATT 232587 Query 25594 TACG---TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | | | |||||||| || || || || |||||||| || |||||||| || ||| Sbjct 232588 TCCCGTATTTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAG 232647 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | || || ||| || ||||| || || ||||||||||| || Sbjct 232648 AACTTCTCTGCCGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATG 232707 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || |||||| | ||||| ||| || || | | | || || || | ||| | Sbjct 232708 ATGGAAAATATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCC 232767 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||| ||| | || ||| || ||| || || ||||||| | |||||| Sbjct 232768 AAGGAGGCAGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCT 232827 Query 25831 CGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887 ||||| | ||||||| | | || || || |||||||| || || || Sbjct 232828 GACTGGGCTTTACGCTGGATCAGTGATGACGAG-GCCTTA--TTTGGCGAACGTCTTGTT 232884 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 || ||||||||||| || || || || ||||| || |||||||| ||||||| ||| | Sbjct 232885 GCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTG 232944 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 ||| ||| || ||||| || || ||||| ||||||||| | ||| || | || || Sbjct 232945 AAGAAGAGAGGCTTGATGCCTGGTTTG-ACTTTCTCCAACGAGTTAATCTGCCGTGATGA 233003 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 |||| | |||| |||||||| ||| || | | | | |||||||| ||| ||| Sbjct 233004 GGGTTTGCACACCGATTTTGCTTGCTTGTTATTCTC---CCACTTGCAAAACAGACCCGA 233060 Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | | | ||| | | || |||| |||||| || | || || ||||||||| Sbjct 233061 TGCTGCTATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTCAC 233120 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 |||| |||||| | | | ||| |||| ||| | || Sbjct 233121 TGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTGGA 233180 Query 26187 GTATGTGGCCGAC-CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 || ||| |||||| || ||| || | || || | | |||| | ||| Sbjct 233181 GTTTGTTGCCGACAGATTACTTGTCGCA-TTAGGCAACGAAAAGGTTTACAATGTTACTA 233239 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 | || || ||||||||||||||||| ||||||| ||| ||||||||||| || ||||||| Sbjct 233240 ATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGAAAAGA 233299 Query 26306 GGGTCGGCGACTATCAA 26322 | || | ||||| ||| Sbjct 233300 GAGTTAGTGACTACCAA 233316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844567788800