Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1 147 4e-30
>seq1
Length=2974285
Score = 147 bits (162), Expect = 4e-30
Identities = 547/857 (64%), Gaps = 16/857 (2%)
Strand=Plus/Plus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
|| || ||| | ||||||||||| || || || ||||| || || || || |||
Sbjct 232468 GAGATTTGGCAAATGTACAAGAAAGCAGAAGCATCTTTTTGGACTGCAGAGGAAATCGAT 232527
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593
||| || |||| | | |||| || || | || ||| | ||| ||| |||
Sbjct 232528 TTGGGAAAAGACACTCATGACTGGAACAATCGCTTGAACGACAACGAGCGTTTCTTCATT 232587
Query 25594 TACG---TGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650
| | | |||||||| || || || || |||||||| || |||||||| || |||
Sbjct 232588 TCCCGTATTTTGGCATTTTTCGCTGCTTCCGATGGTATTGTTAACGAGAACTTGGTGGAG 232647
Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710
| ||| | || || ||| || ||||| || || ||||||||||| ||
Sbjct 232648 AACTTCTCTGCCGAGGTTCAGATTCCAGAAGCCAAATGCTTTTACGGTTTCCAAATCATG 232707
Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770
|| |||||| | ||||| ||| || || | | | || || || | ||| |
Sbjct 232708 ATGGAAAATATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCC 232767
Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830
||| ||| | || ||| || ||| || || ||||||| | ||||||
Sbjct 232768 AAGGAGGCAGACTTTTTATTCAATGCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCT 232827
Query 25831 CGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTA 25887
||||| | ||||||| | | || || || |||||||| || || ||
Sbjct 232828 GACTGGGCTTTACGCTGGATCAGTGATGACGAG-GCCTTA--TTTGGCGAACGTCTTGTT 232884
Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947
|| ||||||||||| || || || || ||||| || |||||||| ||||||| ||| |
Sbjct 232885 GCATTTGCTGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTG 232944
Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006
||| ||| || ||||| || || ||||| ||||||||| | ||| || | || ||
Sbjct 232945 AAGAAGAGAGGCTTGATGCCTGGTTTG-ACTTTCTCCAACGAGTTAATCTGCCGTGATGA 233003
Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066
|||| | |||| |||||||| ||| || | | | | |||||||| ||| |||
Sbjct 233004 GGGTTTGCACACCGATTTTGCTTGCTTGTTATTCTC---CCACTTGCAAAACAGACCCGA 233060
Query 26067 TCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126
| | | ||| | | || |||| |||||| || | || || |||||||||
Sbjct 233061 TGCTGCTATTGTCGAGAAGATTATCACAGAGGCCGTTGCTATTGAAAAGGAGTTTTTCAC 233120
Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186
|||| |||||| | | | ||| |||| ||| | ||
Sbjct 233121 TGATGCTTTGCCTATTTCGTTGTTGGGTATGAACTGTAAATTGATGTGCCAGTACGTGGA 233180
Query 26187 GTATGTGGCCGAC-CATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245
|| ||| |||||| || ||| || | || || | | |||| | |||
Sbjct 233181 GTTTGTTGCCGACAGATTACTTGTCGCA-TTAGGCAACGAAAAGGTTTACAATGTTACTA 233239
Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305
| || || ||||||||||||||||| ||||||| ||| ||||||||||| || |||||||
Sbjct 233240 ATCCCTTTGACTTTATGGAAAACATTTCGTTGGCAGGAAAGACCAACTTTTTCGAAAAGA 233299
Query 26306 GGGTCGGCGACTATCAA 26322
| || | ||||| |||
Sbjct 233300 GAGTTAGTGACTACCAA 233316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844567788800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |