Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq5 199 2e-46
seq1 199 2e-46
>seq5
Length=1501106
Score = 199 bits (220), Expect = 2e-46
Identities = 321/456 (70%), Gaps = 9/456 (2%)
Strand=Plus/Minus
Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974
|||||||| |||| ||| ||| |||||||| | ||||| | | ||||||||||||||||
Sbjct 761821 ATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAATCTCT 761762
Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034
| || |||||||| ||| |||||||| || |||| || | | ||| || ||||| |
Sbjct 761761 GGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATATCACA 761702
Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094
|||||||| || | || | |||||| |||| ||| | || |||||||| ||
Sbjct 761701 ATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGATCAAC 761642
Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154
|||||||||||||||||||| ||| |||||| |||| || ||||||||| ||| ||
Sbjct 761641 ATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTTCCATT 761582
Query 26155 TGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC 26214
|| |||| || | |||||| | | || || ||| ||| | || ||||||||
Sbjct 761581 TGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATTCCACC 761522
Query 26215 AGCCCATTTTGAAATAGCTGCA-CAATCTGAAACTGTATCGAAAATTCCTTTTATGCTAT 26273
|| | ||| |||||| ||| | || || || | | | ||||| | || ||
Sbjct 761521 AGATCCTTTAGAAATAAGAGCAGTCTTGTGCAA-AGTTTTGTATATTCCGTCAATAGAAT 761463
Query 26274 CACCTTTCATTCCTAATAAAAAACAAGAAGA---TAATTGCGAATGAGTTGTTCCTGAAT 26330
|| ||| |||| | || | ||| |||||||| || | ||| | ||||||| |
Sbjct 761462 CATCTTCCATTGCCAAAAGAAAGCAAGAAGAAAGAAAATTAAAATCA---GTTCCTGCGT 761406
Query 26331 TAAATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366
|| | | || |||| ||||||| || |||| ||||
Sbjct 761405 TATAGAGAGTGGGTGAAGCATGAATAAAATA-CCTT 761371
>seq1
Length=2974285
Score = 199 bits (220), Expect = 2e-46
Identities = 320/457 (70%), Gaps = 2/457 (0%)
Strand=Plus/Minus
Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947
||| ||| |||| || ||| |||||||| ||||||||| ||| |||||| || || ||
Sbjct 199691 ATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGG 199632
Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007
|||||||| ||| || |||||||| || ||||||||||| || || ||||||||| |
Sbjct 199631 AATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCT 199572
Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067
| ||| | ||||||||| ||||| | |||||||||||| ||||| | ||||| |||
Sbjct 199571 AATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACC 199512
Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127
||| || ||||| ||||| ||||| | ||||| | |||||||||| | | |||
Sbjct 199511 GGGTCTCTTATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCAT 199452
Query 26128 TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAAT 26187
|||| | ||| | || ||||| || | | ||| | || || ||||| | |||
Sbjct 199451 AGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAAT 199392
Query 26188 ATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTGAAA 26246
| ||| || | ||| || || ||||| | || ||||| ||||| ||| ||
Sbjct 199391 GTTGTGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAA 199332
Query 26247 CTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATA 26306
||||| |||| || | || |||| ||||||| | | ||||| || || || |
Sbjct 199331 -GGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACA 199273
Query 26307 ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGG 26343
||| | | | ||| || | |||||| || || ||
Sbjct 199272 TTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTAGG 199236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253039938321500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |