Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 235 7e-57 >seq1 Length=2974285 Score = 235 bits (260), Expect = 7e-57 Identities = 966/1504 (64%), Gaps = 33/1504 (2%) Strand=Plus/Plus Query 75145 TTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCTCGATGGCATCCTCA 75203 |||||||||| ||||||| | |||| || || | ||| | | | |||||| || Sbjct 199061 TTACTTTGGTTTCAAAACTTTAGAGA-GATCTTACCTTTTAAGAATTAATGGCAAAGTCG 199119 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 |||| || ||| || | | ||| | || || || || || || || || |||||| Sbjct 199120 CAGAAAGACCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTC 199179 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAA 75323 ||| | || || ||| | | ||||||||| | || | |||| | || | Sbjct 199180 CCAGAGTCATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTA 199239 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | | || |||||||||||||| | || || |||||| ||||| | || || | | Sbjct 199240 CTTTGTTTAATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGA 199299 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 | || || || || ||||||| |||| || | | | ||||| || || ||| Sbjct 199300 AAGATGATTCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGA 199359 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 | ||||| |||||||| | ||||| || | | | | | | | ||| | Sbjct 199360 GTGCTGGAGGTATTGGTTTACACATACACAACATTCGCTCGACTGGTGCCTACATTGCTG 199419 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| || ||||||| ||||| ||| || | || || || ||| || | Sbjct 199420 GTACCAACGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTC 199479 Query 75564 GCTATGTAAATCAAGCGGGGCGTCGCAAGGG-----GTCCATC-GCGGTCTACTTGGAAC 75617 | || || |||| ||| || ||| | || ||| || | || ||||||| Sbjct 199480 GTTACGTGGATCA---GGGTGGTAATAAGAGACCCGGTGCATTTGCCTTATATTTGGAAC 199536 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 ||||||| || |||||| | || ||| | || | || || || ||| | ||||| Sbjct 199537 CATGGCACGCGGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAA 199596 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 || |||||| | || || | |||||||||| ||| | || |||||| | |||| Sbjct 199597 TGAGGGCAAGAGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTG 199656 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 || || || | | ||| | | |||| ||| | |||| | |||| | ||||| | Sbjct 199657 AGCAGAATGCTGAGTGGACCTTGTTCTCTCCTAATGAGGCCCAAGGTTTGTCCGATGTTT 199716 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAA---GAGGAGGGTAGAGCCAATG 75854 ||||| |||||||| || | ||| ||||| ||| || | || || || Sbjct 199717 ACGGTGATGAGTTTGAGGCATTGTACGAGAAGTACGAACGTGAAAACCGTGGAAGAAA-- 199774 Query 75855 CGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGA 75913 |||| | | || | | || || ||| | || ||| | | | || || || || || Sbjct 199775 -GACTAT-CAAGGCTCAGAAATTATGGTACGCCATTTTGGAGGCGCAAACCGAAACCGGT 199832 Query 75914 ACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGA 75973 || |||| ||| | ||||| ||||| || || || || | ||| |||||||| ||||| Sbjct 199833 ACCCCATTCATGTTGTACAAAGATGCATGCAATAAAAAAACTAATCAAAAGAACTTGGGT 199892 Query 75974 ACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACG 76033 ||||| || ||| | || |||||| | || ||| | |||||| Sbjct 199893 GTCATCAAATCTTCCAATTTGTGTTGTGAAATTGTCGAATACTCCTCGCCAGATGAGGTT 199952 Query 76034 GCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCA-C 76092 ||||| || || |||||||| ||||| ||||| || ||| | |||| | || | Sbjct 199953 GCTGTATGTAACTTGGCATCTATCGCACTTCCCTCGTTTGTTGAAAAAGACAGCAACAAC 200012 Query 76093 TTTTGAT-----TATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 || || | | ||| || ||||||||| | || ||| |||||||| || | ||| Sbjct 200013 TTGTGGTACAACTTTGAGAAGCTTCATGAAGTTACCAAGGTTGTTACCCGTAACTTGAAC 200072 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAG-TCTAATATGCGAC 76205 || ||||||| | || ||||| |||||| ||| || | |||| ||||| ||| | Sbjct 200073 AGAATCATTGATCGTAACTTTTACCCCGTTCCAGAA-GC-CAAAAGATCTAACATGAGGA 200130 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 | ||||| |||| |||||||| || ||| | || |||| ||||| | | | Sbjct 200131 ATAGACCAATTGCATTGGGTGTGCAGGGTTTGGCAGATGCTTTTATGGCATTGAGATTGC 200190 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | ||||| || | |||| | || ||||| || || || ||||||||||| |||| Sbjct 200191 CCTTTGACTCGCAACAAGCTAGAGAATTGAATATTCAGATTTTCGAAACCATGTACCACG 200250 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | |||| || ||| |||||||| | | | | ||||| || || | | |||| Sbjct 200251 GTGCAGTGGAAGCCAGTATCGAATTGGCGCAGGTCGAGGGTTCTTACGAAAGTTACGAGG 200310 Query 76386 GTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA 76445 | ||||| || ||| | || || | ||||||||| | ||||| | || || || | | Sbjct 200311 GGTCTCCAGCCTCCAAGGGTTTGTTACAGTTTGATCTTTGGGACAG-AAAGCCCAG-TGA 200368 Query 76446 --ACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 76503 | |||||||| | ||| || | || | ||| || | || | Sbjct 200369 GTTGTGGGACTGGGACACATTAAAGCAAAAATTGGCTAAGCATGGTATTAGAAATTCGTT 200428 Query 76504 TTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 76563 ||| | || || ||||| || || ||||| | ||||| |||||||| || || ||||| Sbjct 200429 ATTGGTTGCTCCCATGCCCACGGCATCCACTTCCCAAATATTGGGTAACAACGAGTGCTT 200488 Query 76564 TGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGT 76623 |||||| ||||| | || |||||| |||||| | || ||||| || ||||| Sbjct 200489 TGAACCCTACACTTCCAATATCTACTCCAGAAGAGTATTGGCTGGTGAATTCCAAATTGT 200548 Query 76624 CAAC 76627 |||| Sbjct 200549 CAAC 200552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||||||||| || |||| || || | ||||| || ||||| |||||||| || Sbjct 422077 GGTGCCAAGATTCCAAGAGGTGCTATTTTATCGGGTCCTCCTGGTACAGGAAAGACTCTT 422136 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 | || ||| | || |||||| | || ||||| | |||| || | || | Sbjct 422137 TTAGCGAAAGCAACTGCAGGTGAAGCTGGCGTTCCATTTTTGTCAGTT-TCGGGATCAGA 422195 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||||||||||||||||||||| || || | || |||||| | ||| ||| || Sbjct 422196 ATTTGTGGAGATGTTTGTTGGTGTTGGAGCATCTCGAGTACGCGATTTGTTTAAAACTGC 422255 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 || || | || || |||| |||||||||||||||| | || || || | Sbjct 422256 TCGTGATATGGCTCCTGCCATCATCTTTGTTGATGAGATTGATGCTATAGGAAAAGAAAG 422315 Query 175515 CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | |||| ||| | ||||| || |||||| | ||| | ||||| | | Sbjct 422316 AGGAAATGGTAAAATGGGTGGCAATGATGAAAGAGAAAACACATTGAATCAGTTGTTAGT 422375 Query 175575 CGAGATGGATGGCTTTGACAAT 175596 || |||||||||||||||||| Sbjct 422376 TGAAATGGATGGCTTTGACAAT 422397 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/147 (74%), Gaps = 8/147 (5%) Strand=Plus/Plus Query 46541 GTAAAAAATAAATGGAATGCATCTAGTGCGGTTCGAACGCACGATCTTCTCCTTACTAAA 46600 |||||||| |||| ||||| | || | ||||||| ||||||| ||| |||||| Sbjct 1685476 GTAAAAAA-AAAT--AATGCCTTCAGCCAGATTCGAACTGACGATCTCCTCATTACTAGT 1685532 Query 46601 GAGACGCCTTACCA-CTTGGCCATAGATGCAA----AAACTTCCTCGGCGAGTTTCGATC 46655 ||| ||||||||| |||||||||| | || | |||| |||||| ||| |||| | Sbjct 1685533 GAGGTGCCTTACCAACTTGGCCATAAAGGCTATAGAAAACGACCTCGGTGAGGATCGAAC 1685592 Query 46656 TCGCTACTTCACGATTAACAGTCGTAC 46682 || | | ||| ||||||||||| ||| Sbjct 1685593 TCACGATCTCAAGATTAACAGTCTTAC 1685619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569450857600