Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq7 114 2e-20 >seq1 Length=2974285 Score = 161 bits (178), Expect = 2e-34 Identities = 178/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | ||| ||||| | ||||| ||| || |||||| Sbjct 1361266 ATTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTG 1361325 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||||||||| ||| |||||||| || || || ||||| |||||||| || Sbjct 1361326 TAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361385 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || || |||| || | || |||||| || || Sbjct 1361386 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAG 1361445 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || |||||||| || || | || |||||||| ||||||||| Sbjct 1361446 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Score = 158 bits (174), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | ||| ||||| | ||||| ||| || |||||| Sbjct 1360810 ATTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTG 1360869 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||||||||| ||| |||||||| || || || ||||| |||||||| || Sbjct 1360870 TAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1360929 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || || |||| || | || |||||| || || Sbjct 1360930 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1360989 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || |||||||| || || | || || ||||| |||||||| Sbjct 1360990 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 158 bits (174), Expect = 2e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | ||| ||||| | ||||| ||| || |||||| Sbjct 1361038 ATTTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTG 1361097 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||||||||| ||| |||||||| || || || ||||| |||||||| || Sbjct 1361098 TAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361157 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || || || || |||| || | || |||||| || || Sbjct 1361158 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1361217 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || |||||||| || || | || || ||||| |||||||| Sbjct 1361218 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 152 bits (168), Expect = 9e-32 Identities = 174/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| |||||||||||||||| | ||| ||||| | |||| ||| || |||||| || Sbjct 1360584 TTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTA 1360643 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| ||||||||||| ||| |||||||| || || || ||||| |||||||| || || Sbjct 1360644 GTCTGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTC 1360703 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || || || || || || || |||| || | || |||||| || || || Sbjct 1360704 TGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGA 1360763 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || |||||||| || || | || || ||||| |||||||| Sbjct 1360764 TTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 >seq7 Length=860703 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||||||||| | |||| || | |||| ||| || || || ||||| || Sbjct 37860 ACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 37801 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | || || ||||| || || |||||||| ||||| || || ||||| || Sbjct 37800 AAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGG 37741 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| || | ||| ||| || ||||||||||| || Sbjct 37740 AATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| |||| || || || || |||||||| Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654175086400