Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq1 206 4e-48
seq7 87.8 3e-12
>seq1
Length=2974285
Score = 206 bits (228), Expect = 4e-48
Identities = 579/883 (66%), Gaps = 20/883 (2%)
Strand=Plus/Minus
Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919
||| |||| ||| || | ||| | || ||||| || || ||||||||| |||| || ||
Sbjct 233322 AGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAAT 233263
Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979
| |||||| ||||| |||||||| || ||| ||||| | |||| ||
Sbjct 233262 GTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAATGCGAC 233203
Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039
| |||||| || || ||||| || || || || ||||||| | || |||||||| |
Sbjct 233202 AAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAA 233143
Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099
| | ||| | ||||||| | | ||| || || || || |||| | |||| | ||
Sbjct 233142 CAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGAT 233083
Query 18100 TATGTTTATTACCCTAG----ATTTTGGCAATTTATTAATTATGTGATTATAATATAATA 18155
|| || || ||| || | | ||| || | | || |||| |
Sbjct 233082 AATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGA-------ATAACA 233030
Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215
| || |||||||| ||||| ||||| ||||| | | | ||||| ||||| || || |
Sbjct 233029 AGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCA 232970
Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAG 18274
| || ||||| | ||||| || || | |||||| || ||||| |||| | | | |||
Sbjct 232969 AACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGC-AAACGATCCACTGAAG 232911
Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333
|| ||||| ||||| ||| || || || | | | ||| |||| | | | |
Sbjct 232910 AAAATACCTTCAACAGCA-GCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCA-T 232853
Query 18334 CAGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
|| | ||||| | ||||| || | | || || || ||| |||| ||||
Sbjct 232852 CACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAG 232793
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
|||| || ||| ||| || |||| || || ||||| |||||||| ||||| || |
Sbjct 232792 CATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGT 232733
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
| | || || || || ||||||| || || |||| ||||| || | || || |
Sbjct 232732 AGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTG 232673
Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
|| |||| |||| | | || | || ||||| ||||| ||||| ||||| || | ||
Sbjct 232672 GAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAG 232613
Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT---GAGATTGT 18629
|||||||||||||||| | |||||| || || || || | ||||||
Sbjct 232612 CAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGT 232553
Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689
|||| |||| | |||||| | ||| | ||| || | ||||||||||||| ||| |
Sbjct 232552 TCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTG 232493
Query 18690 CCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732
| | |||||||||| |||| || | | || ||||| ||
Sbjct 232492 CTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAA 232450
Score = 143 bits (158), Expect = 4e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || |||||||||||||||||||| | || || ||| ||
Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | |||| ||||| || || || || || || || || || || ||||| ||
Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| |||||||||| || |||||||| | |||||| |||||| |||||||| || ||
Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
||| || ||| | || |||||| | || || ||||| ||||| |||
Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1361274
Score = 141 bits (156), Expect = 1e-28
Identities = 170/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || |||||||||||||||||||| | || || ||| |||
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || || || || || || || || || || ||||| ||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| || |||||||| | |||||| ||||| |||||||| || |||
Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| ||| | ||||||||| | || || ||||| ||||| |||
Sbjct 1360637 AT-TCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGGT 1360590
Score = 138 bits (152), Expect = 2e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || |||||||||||||||||||| | || || ||| |||
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || || || || || || || || || || ||||| ||
Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| || |||||||| | |||||| |||||| |||||||| || |||
Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || |||||| | || || ||||| ||||| |||
Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1360818
Score = 138 bits (152), Expect = 2e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| | || || |||||||||||||||||||| | || || ||| |||
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || || || || || || || || || || ||||| ||
Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| |||||||||| || |||||||| | |||||| |||||| |||||||| || |||
Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| | || |||||| | || || ||||| ||||| |||
Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1361046
>seq7
Length=860703
Score = 87.8 bits (96), Expect = 3e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || || || || || ||||| || | || || || |||
Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || || || || || || || || ||||| || || || || ||
Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| ||| |||||||| | || || | | ||| | || || || |
Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACA-- 37810
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| ||||||| ||| | || ||||| || ||||| ||||| ||||| ||||
Sbjct 37811 ACATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTG 37861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871817032000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |