Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 206 4e-48 seq7 87.8 3e-12 >seq1 Length=2974285 Score = 206 bits (228), Expect = 4e-48 Identities = 579/883 (66%), Gaps = 20/883 (2%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||| || | ||| | || ||||| || || ||||||||| |||| || || Sbjct 233322 AGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAAT 233263 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | |||||| ||||| |||||||| || ||| ||||| | |||| || Sbjct 233262 GTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAATGCGAC 233203 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | |||||| || || ||||| || || || || ||||||| | || |||||||| | Sbjct 233202 AAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAA 233143 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 | | ||| | ||||||| | | ||| || || || || |||| | |||| | || Sbjct 233142 CAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGAT 233083 Query 18100 TATGTTTATTACCCTAG----ATTTTGGCAATTTATTAATTATGTGATTATAATATAATA 18155 || || || ||| || | | ||| || | | || |||| | Sbjct 233082 AATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGA-------ATAACA 233030 Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215 | || |||||||| ||||| ||||| ||||| | | | ||||| ||||| || || | Sbjct 233029 AGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCA 232970 Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAGAAAAG 18274 | || ||||| | ||||| || || | |||||| || ||||| |||| | | | ||| Sbjct 232969 AACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGC-AAACGATCCACTGAAG 232911 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || ||||| ||||| ||| || || || | | | ||| |||| | | | | Sbjct 232910 AAAATACCTTCAACAGCA-GCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCA-T 232853 Query 18334 CAGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 || | ||||| | ||||| || | | || || || ||| |||| |||| Sbjct 232852 CACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAG 232793 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 |||| || ||| ||| || |||| || || ||||| |||||||| ||||| || | Sbjct 232792 CATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGT 232733 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 | | || || || || ||||||| || || |||| ||||| || | || || | Sbjct 232732 AGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTG 232673 Query 18513 GATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 || |||| |||| | | || | || ||||| ||||| ||||| ||||| || | || Sbjct 232672 GAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAG 232613 Query 18573 ATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT---GAGATTGT 18629 |||||||||||||||| | |||||| || || || || | |||||| Sbjct 232612 CAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGT 232553 Query 18630 TCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGG 18689 |||| |||| | |||||| | ||| | ||| || | ||||||||||||| ||| | Sbjct 232552 TCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTG 232493 Query 18690 CCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 | | |||||||||| |||| || | | || ||||| || Sbjct 232492 CTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAA 232450 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || |||||||||||||||||||| | || || ||| || Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | |||| ||||| || || || || || || || || || || ||||| || Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||||| || |||||||| | |||||| |||||| |||||||| || || Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| || ||| | || |||||| | || || ||||| ||||| ||| Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1361274 Score = 141 bits (156), Expect = 1e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||||||||||||||| | || || ||| ||| Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || || || || || || || || ||||| || Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || |||||||| | |||||| ||||| |||||||| || ||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | ||||||||| | || || ||||| ||||| ||| Sbjct 1360637 AT-TCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGGT 1360590 Score = 138 bits (152), Expect = 2e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||||||||||||||| | || || ||| ||| Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || || || || || || || || ||||| || Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || |||||||| | |||||| |||||| |||||||| || ||| Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || |||||| | || || ||||| ||||| ||| Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1360818 Score = 138 bits (152), Expect = 2e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||||||||||||||| | || || ||| ||| Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || || || || || || || || || ||||| || Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || |||||||| | |||||| |||||| |||||||| || ||| Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || |||||| | || || ||||| ||||| ||| Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGGT 1361046 >seq7 Length=860703 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || || || || || ||||| || | || || || ||| Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || || || || ||||| || || || || || Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| |||||||| | || || | | ||| | || || || | Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACA-- 37810 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| ||| | || ||||| || ||||| ||||| ||||| |||| Sbjct 37811 ACATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTG 37861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871817032000