Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-26 seq7 116 7e-21 >seq1 Length=2974285 Score = 132 bits (146), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 171828 tttAGTTTCATA-ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGA 171886 ||||| || || ||||||||||| | || ||||| | ||| | |||| ||| || Sbjct 1360575 TTTAGCATCTTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTG 1360634 Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || |||||||| | || | | || || ||||| |||||||| ||||| ||||| Sbjct 1360635 AATATTGTAGTCTGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCT 1360694 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || || || || || || || || || || || ||||| Sbjct 1360695 CTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGT 1360754 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || ||||| || || || ||||| ||||| ||||| || || || | || || || Sbjct 1360755 GTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1360814 Query 172067 CAT 172069 ||| Sbjct 1360815 CAT 1360817 Score = 129 bits (142), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||||| | ||| | |||| ||| || |||||| || ||| Sbjct 1360816 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1360875 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 1360876 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360935 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || || ||||| || || ||||| Sbjct 1360936 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1360995 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||| ||||| || || || | || || ||||| Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 129 bits (142), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||||| | ||| | |||| ||| || |||||| || ||| Sbjct 1361044 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361103 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 1361104 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361163 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || || ||||| || || ||||| Sbjct 1361164 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1361223 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||| ||||| || || || | || || ||||| Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || ||||| | ||| | |||| ||| || |||||| || ||| Sbjct 1361272 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361331 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| ||| Sbjct 1361332 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361391 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || || || || ||||| || || ||||| Sbjct 1361392 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1361451 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| ||||| ||||| || || || | || || |||||| Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Score = 125 bits (138), Expect = 1e-23 Identities = 355/542 (65%), Gaps = 9/542 (2%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||| |||| | |||||||||||||| || |||||| | || || || Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCT---CCTATCAATACATAT 38948 | |||||| ||||| ||||| | ||| ||| ||||| |||| ||| Sbjct 233258 TCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAATGCGACA--- 233202 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | |||||| ||||| ||||| || || || || |||| |||| ||| ||||||||||| Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || || || || |||||| | ||| || ||||| || | || || | | | || Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082 Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128 ||| | | | || || | | ||| | | | | ||| || || Sbjct 233081 ATCTT--CTCGACAATAGCAGCATCGGGTCTGTTTTGCAAG-TGGGAGAATAACAAGCAA 233025 Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188 |||||||| || || ||||| || || | | || || || || ||||| || || Sbjct 233024 GCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCA 232965 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 ||||| || |||||||| || | |||||| || |||||||| | | ||||| ||| Sbjct 232964 GGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATA 232905 Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308 || || ||| |||||||| | | | | | ||||| | | ||||| ||| Sbjct 232904 CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATC 232845 Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368 || || ||||| || || || |||||||| |||| ||| | || ||||| || ||| Sbjct 232844 CAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTGAAT 232785 Query 39369 AA 39370 || Sbjct 232784 AA 232783 >seq7 Length=860703 Score = 116 bits (128), Expect = 7e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 171826 tttttAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||| ||| || ||||||||| | || || || || || | ||||| ||| || Sbjct 37876 TTTTTCTCTTCTTACCACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTT 37817 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 || || || || || | || || |||| |||||||| |||||||||||||| |||| Sbjct 37816 GGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATC 37757 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 | || |||||||| || || ||||| || || || || || || ||||| || | Sbjct 37756 TTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGG 37697 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 | || || || || || || || || || || ||||| ||||| || || | ||| || | Sbjct 37696 TGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTT 37637 Query 172066 GCAT 172069 |||| Sbjct 37636 GCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135773716000