Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 9e-26
seq7 116 7e-21
>seq1
Length=2974285
Score = 132 bits (146), Expect = 9e-26
Identities = 176/243 (72%), Gaps = 1/243 (0%)
Strand=Plus/Plus
Query 171828 tttAGTTTCATA-ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGA 171886
||||| || || ||||||||||| | || ||||| | ||| | |||| ||| ||
Sbjct 1360575 TTTAGCATCTTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTG 1360634
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| || |||||||| | || | | || || ||||| |||||||| ||||| |||||
Sbjct 1360635 AATATTGTAGTCTGATAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCT 1360694
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
||| ||||| ||||| || || || || || || || || || || || |||||
Sbjct 1360695 CTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGT 1360754
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
|| || ||||| || || || ||||| ||||| ||||| || || || | || || ||
Sbjct 1360755 GTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTG 1360814
Query 172067 CAT 172069
|||
Sbjct 1360815 CAT 1360817
Score = 129 bits (142), Expect = 1e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || ||||| | ||| | |||| ||| || |||||| || |||
Sbjct 1360816 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1360875
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct 1360876 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1360935
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || || || || || || ||||| || || |||||
Sbjct 1360936 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1360995
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||| ||||| || || || | || || |||||
Sbjct 1360996 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 129 bits (142), Expect = 1e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || ||||| | ||| | |||| ||| || |||||| || |||
Sbjct 1361044 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361103
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct 1361104 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361163
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || || || || || || ||||| || || |||||
Sbjct 1361164 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCA 1361223
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| ||||| ||||| || || || | || || |||||
Sbjct 1361224 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || ||||| | ||| | |||| ||| || |||||| || |||
Sbjct 1361272 ATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCT 1361331
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
||||| | || | || || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct 1361332 GATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGT 1361391
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || || || || || || || || ||||| || || |||||
Sbjct 1361392 GGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCA 1361451
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| || || ||||| ||||| ||||| || || || | || || ||||||
Sbjct 1361452 ACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502
Score = 125 bits (138), Expect = 1e-23
Identities = 355/542 (65%), Gaps = 9/542 (2%)
Strand=Plus/Minus
Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891
|||||||| ||| |||| | |||||||||||||| || |||||| | || || ||
Sbjct 233318 TTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAACGAAATGTTT 233259
Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCT---CCTATCAATACATAT 38948
| |||||| ||||| ||||| | ||| ||| ||||| |||| |||
Sbjct 233258 TCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAATGCGACA--- 233202
Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008
| |||||| ||||| ||||| || || || || |||| |||| ||| |||||||||||
Sbjct 233201 AGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCATACCCAAC 233142
Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068
|| || || || |||||| | ||| || ||||| || | || || | | | ||
Sbjct 233141 AACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTCTGTGATA 233082
Query 39069 atcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACAT 39128
||| | | | || || | | ||| | | | | ||| || ||
Sbjct 233081 ATCTT--CTCGACAATAGCAGCATCGGGTCTGTTTTGCAAG-TGGGAGAATAACAAGCAA 233025
Query 39129 GCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCT 39188
|||||||| || || ||||| || || | | || || || || ||||| || ||
Sbjct 233024 GCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAAACCA 232965
Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248
||||| || |||||||| || | |||||| || |||||||| | | ||||| |||
Sbjct 232964 GGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAAAATA 232905
Query 39249 CCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATC 39308
|| || ||| |||||||| | | | | | ||||| | | ||||| |||
Sbjct 232904 CCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATCACTGATC 232845
Query 39309 CAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAAT 39368
|| || ||||| || || || |||||||| |||| ||| | || ||||| || |||
Sbjct 232844 CAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGCATTGAAT 232785
Query 39369 AA 39370
||
Sbjct 232784 AA 232783
>seq7
Length=860703
Score = 116 bits (128), Expect = 7e-21
Identities = 172/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 171826 tttttAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885
||||| ||| || ||||||||| | || || || || || | ||||| ||| ||
Sbjct 37876 TTTTTCTCTTCTTACCACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTT 37817
Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945
|| || || || || | || || |||| |||||||| |||||||||||||| ||||
Sbjct 37816 GGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATC 37757
Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005
| || |||||||| || || ||||| || || || || || || ||||| || |
Sbjct 37756 TTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGG 37697
Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065
| || || || || || || || || || || ||||| ||||| || || | ||| || |
Sbjct 37696 TGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTT 37637
Query 172066 GCAT 172069
||||
Sbjct 37636 GCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905135773716000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |