Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq5 131 5e-25 seq4 109 2e-18 seq3 107 6e-18 seq6 93.3 1e-13 >seq1 Length=2974285 Score = 138 bits (152), Expect = 3e-27 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || ||||||||||| || || |||||||| |||||||| || | | ||||||||| ||| Sbjct 199501 TTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATA 199442 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| || || || ||||| || ||| | | ||||| ||||||| || || || Sbjct 199441 CCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATG 199382 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 |||| |||||||| || | | || ||||| || ||| ||| | |||| || Sbjct 199381 TGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAA 199322 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 ||||| |||||||||||||||| ||| | | | | ||||||| | |||||| Sbjct 199321 ATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTG 199262 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGG 156325 ||||| ||||| || || | ||||| Sbjct 199261 GGTGTACCAGCATTAAACAAAGTAGG 199236 Score = 98.7 bits (108), Expect = 3e-15 Identities = 327/499 (66%), Gaps = 16/499 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || |||| | || ||| ||||||| || | | || || || Sbjct 422480 CTATCAAATCTTCCAGGTCTTAACAAAGCTTTATCTAATACGTCAGGACGATTAGTACCT 422421 Query 288910 GCCAATACAACAATA-GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || |||||||||| | ||| | ||| | ||| |||||||| ||| | ||||| Sbjct 422420 GCTAATACAACAACATGATCAGAATTG-TCAAAGCCATCCATTTCAACTAACAACTGATT 422362 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 | ||| | ||| ||||||||||| ||| || | ||| || | |||| ||| Sbjct 422361 CAATGTGTTTTCTCTTTCATCATTGCCACCCATT---TTACC---ATTTCCTCTTTCTTT 422308 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||||||||| || |||| || || | |||| | | | ||| || Sbjct 422307 TCCTATAGCATCAATCTCATCAACAAAGATGATGGCAGGAGCCATATCACGAGCAGTTTT 422248 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || || | ||| || |||||||||| ||||||| |||| || |||||||| || | Sbjct 422247 AAACAAATCGCGTACTCGAGATGCTCCAACACCAACAAACATCTCCACAAATTCTGATCC 422188 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || ||| | |||| || ||||| ||||| ||| |||| | ||| ||||| Sbjct 422187 CGAAACTGACAAAAATGGAACGCCAGCTTCACCTGCAGTTGCTTTCGCTAAAAGAGTCTT 422128 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 ||||| ||||| || ||| ||| | | | || |||| | || || || || |||| Sbjct 422127 TCCTGTACCAGGAGGACCCGATAAAATAGCACCTCTTGGAATCTTGGCACC--CA-ACTT 422071 Query 289269 ---ATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324 || || | | || |||| ||| || | |||| || | | ||| | ||| | | Sbjct 422070 TTCGTACTTTTGA-GGATCTTGTAAGAACTTAACAAACTCTACGATTTCTTCTTTGGATT 422012 Query 289325 CATCACATCCTGCTACATC 289343 | ||||| ||||| ||||| Sbjct 422011 CTTCACAACCTGCCACATC 421993 >seq5 Length=1501106 Score = 131 bits (144), Expect = 5e-25 Identities = 562/875 (64%), Gaps = 29/875 (3%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || | ||| || ||||| || || || ||| || || |||| ||| |||||||| Sbjct 762090 TACTCAATAATTTCGCAGCATAGATTGGATGACTTAATTGTCCCTAGATTTTTCTGGTTT 762031 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||||| |||||| ||||| || |||| ||||| || |||||| || | || | Sbjct 762030 GATTTTGAGTTACATGCATCTTTATATAACATGTACGGCCCTCCTGTTTCTGTTTGGGAT 761971 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | ||| |||||| | | | || |||||| ||| || ||||| ||| Sbjct 761970 TCTAAAATGGCTAGCCATAATTTCTGCGCCTTAATTGTAACTTTGGCTCGACCTTCAGAC 761911 Query 155811 TCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||||| ||| |||| | | | || || ||||||||||| || ||||| Sbjct 761910 TCATAGGATTCGTATAA--CTTGACAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAG 761853 Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928 | ||| || |||||| ||||| | ||| | || | || ||| |||| || Sbjct 761852 CTTCATCTGGTGAAAACAATGACCATTCTAGATTTTGCTTAACTCTCTTCATGAATAAAT 761793 Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT--CCTCATCGCCGTGATT 155986 | ||| | |||| || | || || | || | | | | | ||||||||| Sbjct 761792 CGGATATCCATAGTCCATAAAATAAATCTCTGG--TTCGCATTTCTTGTTTGCCGTGATT 761735 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || | | | || |||||| ||| |||||| | || | ||||| Sbjct 761734 TTTCTTTAAATTGAGTACATCGAATATATCACAATGCCATGGCTCAATGTATACTGCAAA 761675 Query 156047 ACTACCATTCCTCT---TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | ||| ||| | || || ||||| ||||| | ||||| | |||||| || | Sbjct 761674 AGCACCTGGTCTCCGACTACCTCCTTGATCAACATATCTTGCAGTTTCATTGAATACTCG 761615 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATG 156162 | ||| ||||| || ||| | || || ||||| | | |||| | | || ||| Sbjct 761614 CAACATGGGAATTATTCCAGTTGATGTTCCATTTGAGCTAGCGA-TGTAGGATCCATTAC 761556 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 ||||||||||||||||||| || || ||||| || | ||||||||| |||| | | Sbjct 761555 CCCGAACATTATGAATATGTAAGCCTATTCCACCAGATCCTTTAGAAATAAGAGC--AGT 761498 Query 156223 CCTTTACA--GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | | | || || ||| | || || |||||||||||||||||||||| | ||| |||| Sbjct 761497 CTTGTGCAAAGTTTTGTATATTCCGTCAATAGAATCATCTTCCATTGCCAAAAGAAAGCA 761438 Query 156281 CG----AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336 | || |||| | || ||||| ||||| | || || |||| ||||||| Sbjct 761437 AGAAGAAAGAAAATTAAAATC----AGTTCCTGCGTTATAGAGAGTGGGTGAAGCATGAA 761382 Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACCC 156394 |||||||| | || ||||| || ||||| || | ||||| | ||| || || Sbjct 761381 TAAAATACCTTTTTGACATGAGGTCATATGTTTCAGCAACATCTT-TTAAG-TTTTCGCC 761324 Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454 ||||| | || | ||||||| ||||| ||||| || |||| | |||| Sbjct 761323 ATGAATGCCAATTGCCACCCTCAAAAACATAAATTGAGGTGTTTCAGCAATTTCATCATC 761264 Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAA 156489 |||| || ||| |||| || || ||||||| Sbjct 761263 AATTTTCAAAAGATATGACTTTTGCAATGTTTTAA 761229 >seq4 Length=1642203 Score = 109 bits (120), Expect = 2e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || |||||| ||||| | | ||||| ||||||||| ||||||||||||||| || || Sbjct 1591765 AACCATAATATCTTCTAAAGCCTTGACTAAACGACGTTGAATATAACCAGTTTCAGCGGT 1591706 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 ||| |||||||||||||||| ||| | | |||| ||||||| || ||||| | |||| Sbjct 1591705 TTTCACAGCTGTATCAATTAAACCTTCTCTACCAGCCATAGCGTGAAAGAAAAATTCTTG 1591646 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 ||| || || | | | | ||| | ||||| || || | ||| || |||| || Sbjct 1591645 TGGTGTTAAACCTCTTAAATAAGAGTTTTCAACAAACCCCTTGGACTCAGGAGAATAATC 1591586 Query 302742 GAACTTGGTAAAGTGTGGCA 302761 || ||||| || |||| Sbjct 1591585 ATCTTTAGTAAAATGGGGCA 1591566 Score = 100 bits (110), Expect = 8e-16 Identities = 119/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| |||||||| ||| || | ||||||||| Sbjct 1592532 AGAATTTCCTTAAGACGAGGAACACCCAAAGTTACGTT---CTTTGAAGAGACACCAGCA 1592476 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||||||||| | || | ||| || | |||||||| ||| ||| || ||||| Sbjct 1592475 TAATGGAAAGTATTTAATGTCATTTGTGTTGCAGGCTCACCGATAGATTGGGCAGCAATT 1592416 Query 301933 ATACCAACCATTTCTCCTGG-TGCTACAATAGACTTCT 301969 | ||||||||| || || || ||| ||||| ||||||| Sbjct 1592415 ACACCAACCATCTCGCCAGGATGC-ACAATCGACTTCT 1592379 >seq3 Length=1643810 Score = 107 bits (118), Expect = 6e-18 Identities = 346/525 (66%), Gaps = 23/525 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| ||||||| | | ||||| || || ||||| ||||||||||| || Sbjct 701987 CTGTCAAATCTACCAGGTCTCATCAATGCCTTATCCAAGATATCTGCTCTGTTTGTACCT 702046 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969 || ||||| |||| | || | | || |||||||| ||| | ||||| Sbjct 702047 GCTAATACCACAACATGATCAGAACTATCGAAACCATCCATCTCAACTAATAACTGATTC 702106 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCC---GAATCGCTCCttttt 289026 | || ||| | ||||||||| | ||| |||| | |||| ||| | || Sbjct 702107 AAGGTAGTTTCACGTTCATCATTAGCACCACTTGCGTTACCCTTAGAA------CGTTGC 702160 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 ||||||| ||||||||| || || | || | | | || | ||| | | || | Sbjct 702161 TTACCAATAGCATCAATCTCATCCACAAACACAATGGAGGGGGCATTCTCGCGAGCTGTC 702220 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| || | || | ||| || || | |||||| ||||||| ||||| |||||| Sbjct 702221 TTAAATAAGTCGCGCACTCTGGAAGCACCCACCCCAACAAACATTTCAACAAACTCAGAA 702280 Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | ||||| ||||| ||||| ||| ||||| || || |||||| || | | ||| Sbjct 702281 CCAGATAC-TGAATAGAATGGAACACCGGCTTCACCAGCAGTTGCCCTTGCAATCAATGT 702339 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC-CCTTTGGTACTT-TTGCCCCAGCA 289263 |||||||| || || ||||| || || | ||| ||| | || |||| || || Sbjct 702340 TTTACCTGTACCCGGAGGTCC--TGAAAGGATGGCACCTCTGGGAATTCTTGCACC--CA 702395 Query 289264 GACTT---ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 |||| |||||| |||||| | | ||||| | || | |||| || ||| | ||| Sbjct 702396 -ACTTTTCATATTTTTCAGGGTTTTGCAAAAACTTAACGAATTCCATAACTTCTTCTTTA 702454 Query 289321 GCCTCATCACAT-CCTGCTACATCAGCAAAAGTAATATTAATATC 289364 || ||| |||| || |||||||| || |||| |||| ||| Sbjct 702455 GCTTCA-GACATACCAGCTACATCCTTGAATCTAATCTTAACATC 702498 >seq6 Length=1507273 Score = 93.3 bits (102), Expect = 1e-13 Identities = 262/401 (65%), Gaps = 25/401 (6%) Strand=Plus/Minus Query 380964 TGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAA 381023 |||||| |||||| | || || || |||||||| ||||| || || || || | Sbjct 987446 TGTAAAGATCTGGGAGGGAAACGGGTCTCGTGAGTACTTAGACTCGTTGGGGCTCACAGA 987387 Query 381024 TAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGA 381083 | || | ||| | || || |||| || ||||| ||| | |||||| ||||| Sbjct 987386 CCGCCGCGAGGGCGACTTGGGACCCGTTTATGGGTTTCAATGGCGCCATTTTGGAGCCGA 987327 Query 381084 TTATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCAT 381143 || | | ||||| | || || ||||| |||||||| || ||| || | || | || Sbjct 987326 ATACAAAGACTGTGACACAGACTACACTGGGAAGGGTGTAGATCAGCTACAGGATGTTAT 987267 Query 381144 AGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGAA 381203 | || |||| |||||| || | | | || | || | || ||| | || ||||| Sbjct 987266 AAACAAGCTCAAAAAT----AACCCATACGATC--GAAGAATTATCATGTCGGCTTGGAA 987213 Query 381204 TCCTTGCCAGATT--AATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAAT 381261 ||| |||||| | | | ||||||||||| || |||||| |||| |||||||| || Sbjct 987212 CCCTG--CAGATTTCAGTAAAATGGCTTTACCTCCATGCCATGTTTTCTGCCAGTTTTAT 987155 Query 381262 GTT------------TCGGCTGGTAA---TAAGTTAAGTTGTGCTTTATATCAGCGTAGC 381306 ||| || | ||| |||| || ||| || || ||||| || Sbjct 987154 GTTAACTTTCCAGAATCCCCGTCTAAACCTAAGCTATCGTGTTTATTGTACCAGCGCAGT 987095 Query 381307 GGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTA 381347 | ||| | || ||||||||||||| |||||||| || || Sbjct 987094 TGCGATATGGGATTGGGTGTTCCATTTAATATTGCATCATA 987054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817222846740