Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 138 3e-27
seq5 131 5e-25
seq4 109 2e-18
seq3 107 6e-18
seq6 93.3 1e-13
>seq1
Length=2974285
Score = 138 bits (152), Expect = 3e-27
Identities = 190/266 (71%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119
|| ||||||||||| || || |||||||| |||||||| || | | ||||||||| |||
Sbjct 199501 TTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATA 199442
Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179
||||| || || || ||||| || ||| | | ||||| ||||||| || || ||
Sbjct 199441 CCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATG 199382
Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239
|||| |||||||| || | | || ||||| || ||| ||| | |||| ||
Sbjct 199381 TGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAA 199322
Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299
||||| |||||||||||||||| ||| | | | | ||||||| | ||||||
Sbjct 199321 ATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTG 199262
Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGG 156325
||||| ||||| || || | |||||
Sbjct 199261 GGTGTACCAGCATTAAACAAAGTAGG 199236
Score = 98.7 bits (108), Expect = 3e-15
Identities = 327/499 (66%), Gaps = 16/499 (3%)
Strand=Plus/Minus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|||||||| || |||| | || ||| ||||||| || | | || || ||
Sbjct 422480 CTATCAAATCTTCCAGGTCTTAACAAAGCTTTATCTAATACGTCAGGACGATTAGTACCT 422421
Query 288910 GCCAATACAACAATA-GATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968
|| |||||||||| | ||| | ||| | ||| |||||||| ||| | |||||
Sbjct 422420 GCTAATACAACAACATGATCAGAATTG-TCAAAGCCATCCATTTCAACTAACAACTGATT 422362
Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028
| ||| | ||| ||||||||||| ||| || | ||| || | |||| |||
Sbjct 422361 CAATGTGTTTTCTCTTTCATCATTGCCACCCATT---TTACC---ATTTCCTCTTTCTTT 422308
Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088
|| | ||||||||| || |||| || || | |||| | | | ||| ||
Sbjct 422307 TCCTATAGCATCAATCTCATCAACAAAGATGATGGCAGGAGCCATATCACGAGCAGTTTT 422248
Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148
||| || || | ||| || |||||||||| ||||||| |||| || |||||||| || |
Sbjct 422247 AAACAAATCGCGTACTCGAGATGCTCCAACACCAACAAACATCTCCACAAATTCTGATCC 422188
Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208
|| ||| | |||| || ||||| ||||| ||| |||| | ||| |||||
Sbjct 422187 CGAAACTGACAAAAATGGAACGCCAGCTTCACCTGCAGTTGCTTTCGCTAAAAGAGTCTT 422128
Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268
||||| ||||| || ||| ||| | | | || |||| | || || || || ||||
Sbjct 422127 TCCTGTACCAGGAGGACCCGATAAAATAGCACCTCTTGGAATCTTGGCACC--CA-ACTT 422071
Query 289269 ---ATATTTCTCAGGGCTCTT-TAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCT 289324
|| || | | || |||| ||| || | |||| || | | ||| | ||| | |
Sbjct 422070 TTCGTACTTTTGA-GGATCTTGTAAGAACTTAACAAACTCTACGATTTCTTCTTTGGATT 422012
Query 289325 CATCACATCCTGCTACATC 289343
| ||||| ||||| |||||
Sbjct 422011 CTTCACAACCTGCCACATC 421993
>seq5
Length=1501106
Score = 131 bits (144), Expect = 5e-25
Identities = 562/875 (64%), Gaps = 29/875 (3%)
Strand=Plus/Minus
Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690
|| || | ||| || ||||| || || || ||| || || |||| ||| ||||||||
Sbjct 762090 TACTCAATAATTTCGCAGCATAGATTGGATGACTTAATTGTCCCTAGATTTTTCTGGTTT 762031
Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750
||||| |||||| ||||| || |||| ||||| || |||||| || | || |
Sbjct 762030 GATTTTGAGTTACATGCATCTTTATATAACATGTACGGCCCTCCTGTTTCTGTTTGGGAT 761971
Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810
|| | ||| |||||| | | | || |||||| ||| || ||||| |||
Sbjct 761970 TCTAAAATGGCTAGCCATAATTTCTGCGCCTTAATTGTAACTTTGGCTCGACCTTCAGAC 761911
Query 155811 TCATAT--TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868
||||| ||| |||| | | | || || ||||||||||| || |||||
Sbjct 761910 TCATAGGATTCGTATAA--CTTGACAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAG 761853
Query 155869 ACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACAT 155928
| ||| || |||||| ||||| | ||| | || | || ||| |||| ||
Sbjct 761852 CTTCATCTGGTGAAAACAATGACCATTCTAGATTTTGCTTAACTCTCTTCATGAATAAAT 761793
Query 155929 CACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT--CCTCATCGCCGTGATT 155986
| ||| | |||| || | || || | || | | | | | |||||||||
Sbjct 761792 CGGATATCCATAGTCCATAAAATAAATCTCTGG--TTCGCATTTCTTGTTTGCCGTGATT 761735
Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046
||| || | | | || |||||| ||| |||||| | || | |||||
Sbjct 761734 TTTCTTTAAATTGAGTACATCGAATATATCACAATGCCATGGCTCAATGTATACTGCAAA 761675
Query 156047 ACTACCATTCCTCT---TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103
| ||| ||| | || || ||||| ||||| | ||||| | |||||| || |
Sbjct 761674 AGCACCTGGTCTCCGACTACCTCCTTGATCAACATATCTTGCAGTTTCATTGAATACTCG 761615
Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAACCAGATG 156162
| ||| ||||| || ||| | || || ||||| | | |||| | | || |||
Sbjct 761614 CAACATGGGAATTATTCCAGTTGATGTTCCATTTGAGCTAGCGA-TGTAGGATCCATTAC 761556
Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222
||||||||||||||||||| || || ||||| || | ||||||||| |||| | |
Sbjct 761555 CCCGAACATTATGAATATGTAAGCCTATTCCACCAGATCCTTTAGAAATAAGAGC--AGT 761498
Query 156223 CCTTTACA--GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280
| | | || || ||| | || || |||||||||||||||||||||| | ||| ||||
Sbjct 761497 CTTGTGCAAAGTTTTGTATATTCCGTCAATAGAATCATCTTCCATTGCCAAAAGAAAGCA 761438
Query 156281 CG----AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336
| || |||| | || ||||| ||||| | || || |||| |||||||
Sbjct 761437 AGAAGAAAGAAAATTAAAATC----AGTTCCTGCGTTATAGAGAGTGGGTGAAGCATGAA 761382
Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTC--CTTAATCTTCTCAAGATTAGACCC 156394
|||||||| | || ||||| || ||||| || | ||||| | ||| || ||
Sbjct 761381 TAAAATACCTTTTTGACATGAGGTCATATGTTTCAGCAACATCTT-TTAAG-TTTTCGCC 761324
Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454
||||| | || | ||||||| ||||| ||||| || |||| | ||||
Sbjct 761323 ATGAATGCCAATTGCCACCCTCAAAAACATAAATTGAGGTGTTTCAGCAATTTCATCATC 761264
Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAA 156489
|||| || ||| |||| || || |||||||
Sbjct 761263 AATTTTCAAAAGATATGACTTTTGCAATGTTTTAA 761229
>seq4
Length=1642203
Score = 109 bits (120), Expect = 2e-18
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621
|| |||||| ||||| | | ||||| ||||||||| ||||||||||||||| || ||
Sbjct 1591765 AACCATAATATCTTCTAAAGCCTTGACTAAACGACGTTGAATATAACCAGTTTCAGCGGT 1591706
Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681
||| |||||||||||||||| ||| | | |||| ||||||| || ||||| | ||||
Sbjct 1591705 TTTCACAGCTGTATCAATTAAACCTTCTCTACCAGCCATAGCGTGAAAGAAAAATTCTTG 1591646
Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741
||| || || | | | | ||| | ||||| || || | ||| || |||| ||
Sbjct 1591645 TGGTGTTAAACCTCTTAAATAAGAGTTTTCAACAAACCCCTTGGACTCAGGAGAATAATC 1591586
Query 302742 GAACTTGGTAAAGTGTGGCA 302761
|| ||||| || ||||
Sbjct 1591585 ATCTTTAGTAAAATGGGGCA 1591566
Score = 100 bits (110), Expect = 8e-16
Identities = 119/158 (75%), Gaps = 5/158 (3%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | || ||| |||||||| |||||||| ||| || | |||||||||
Sbjct 1592532 AGAATTTCCTTAAGACGAGGAACACCCAAAGTTACGTT---CTTTGAAGAGACACCAGCA 1592476
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
| ||||||||||| | || | ||| || | |||||||| ||| ||| || |||||
Sbjct 1592475 TAATGGAAAGTATTTAATGTCATTTGTGTTGCAGGCTCACCGATAGATTGGGCAGCAATT 1592416
Query 301933 ATACCAACCATTTCTCCTGG-TGCTACAATAGACTTCT 301969
| ||||||||| || || || ||| ||||| |||||||
Sbjct 1592415 ACACCAACCATCTCGCCAGGATGC-ACAATCGACTTCT 1592379
>seq3
Length=1643810
Score = 107 bits (118), Expect = 6e-18
Identities = 346/525 (66%), Gaps = 23/525 (4%)
Strand=Plus/Plus
Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909
|| ||||| ||||||| | | ||||| || || ||||| ||||||||||| ||
Sbjct 701987 CTGTCAAATCTACCAGGTCTCATCAATGCCTTATCCAAGATATCTGCTCTGTTTGTACCT 702046
Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATTA 288969
|| ||||| |||| | || | | || |||||||| ||| | |||||
Sbjct 702047 GCTAATACCACAACATGATCAGAACTATCGAAACCATCCATCTCAACTAATAACTGATTC 702106
Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCC---GAATCGCTCCttttt 289026
| || ||| | ||||||||| | ||| |||| | |||| ||| | ||
Sbjct 702107 AAGGTAGTTTCACGTTCATCATTAGCACCACTTGCGTTACCCTTAGAA------CGTTGC 702160
Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
||||||| ||||||||| || || | || | | | || | ||| | | || |
Sbjct 702161 TTACCAATAGCATCAATCTCATCCACAAACACAATGGAGGGGGCATTCTCGCGAGCTGTC 702220
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|||||| || | || | ||| || || | |||||| ||||||| ||||| ||||||
Sbjct 702221 TTAAATAAGTCGCGCACTCTGGAAGCACCCACCCCAACAAACATTTCAACAAACTCAGAA 702280
Query 289147 GCGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205
| ||||| ||||| ||||| ||| ||||| || || |||||| || | | |||
Sbjct 702281 CCAGATAC-TGAATAGAATGGAACACCGGCTTCACCAGCAGTTGCCCTTGCAATCAATGT 702339
Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTC-CCTTTGGTACTT-TTGCCCCAGCA 289263
|||||||| || || ||||| || || | ||| ||| | || |||| || ||
Sbjct 702340 TTTACCTGTACCCGGAGGTCC--TGAAAGGATGGCACCTCTGGGAATTCTTGCACC--CA 702395
Query 289264 GACTT---ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320
|||| |||||| |||||| | | ||||| | || | |||| || ||| | |||
Sbjct 702396 -ACTTTTCATATTTTTCAGGGTTTTGCAAAAACTTAACGAATTCCATAACTTCTTCTTTA 702454
Query 289321 GCCTCATCACAT-CCTGCTACATCAGCAAAAGTAATATTAATATC 289364
|| ||| |||| || |||||||| || |||| |||| |||
Sbjct 702455 GCTTCA-GACATACCAGCTACATCCTTGAATCTAATCTTAACATC 702498
>seq6
Length=1507273
Score = 93.3 bits (102), Expect = 1e-13
Identities = 262/401 (65%), Gaps = 25/401 (6%)
Strand=Plus/Minus
Query 380964 TGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAA 381023
|||||| |||||| | || || || |||||||| ||||| || || || || |
Sbjct 987446 TGTAAAGATCTGGGAGGGAAACGGGTCTCGTGAGTACTTAGACTCGTTGGGGCTCACAGA 987387
Query 381024 TAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGA 381083
| || | ||| | || || |||| || ||||| ||| | |||||| |||||
Sbjct 987386 CCGCCGCGAGGGCGACTTGGGACCCGTTTATGGGTTTCAATGGCGCCATTTTGGAGCCGA 987327
Query 381084 TTATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCAT 381143
|| | | ||||| | || || ||||| |||||||| || ||| || | || | ||
Sbjct 987326 ATACAAAGACTGTGACACAGACTACACTGGGAAGGGTGTAGATCAGCTACAGGATGTTAT 987267
Query 381144 AGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGGAA 381203
| || |||| |||||| || | | | || | || | || ||| | || |||||
Sbjct 987266 AAACAAGCTCAAAAAT----AACCCATACGATC--GAAGAATTATCATGTCGGCTTGGAA 987213
Query 381204 TCCTTGCCAGATT--AATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCAAT 381261
||| |||||| | | | ||||||||||| || |||||| |||| |||||||| ||
Sbjct 987212 CCCTG--CAGATTTCAGTAAAATGGCTTTACCTCCATGCCATGTTTTCTGCCAGTTTTAT 987155
Query 381262 GTT------------TCGGCTGGTAA---TAAGTTAAGTTGTGCTTTATATCAGCGTAGC 381306
||| || | ||| |||| || ||| || || ||||| ||
Sbjct 987154 GTTAACTTTCCAGAATCCCCGTCTAAACCTAAGCTATCGTGTTTATTGTACCAGCGCAGT 987095
Query 381307 GGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTA 381347
| ||| | || ||||||||||||| |||||||| || ||
Sbjct 987094 TGCGATATGGGATTGGGTGTTCCATTTAATATTGCATCATA 987054
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817222846740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |