Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq7 104 2e-17 >seq1 Length=2974285 Score = 107 bits (118), Expect = 2e-18 Identities = 692/1098 (63%), Gaps = 32/1098 (3%) Strand=Plus/Minus Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570 || |||||||| |||||||||| | ||| || ||| ||| | || ||||| | Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483 Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630 |||||||| |||| || || | |||| || || |||||| || ||||| | ||| Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423 Query 138631 TTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 || | | ||| || ||| || || ||| | | |||||||||||| || | Sbjct 200422 TTTCTAATACCATGCTTAGCCAATTT--TTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 | || ||| ||| ||| | ||| ||||||||| ||| || ||| || |||| Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | ||||| ||| | |||||||| ||| | || || || | ||||| | || Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCG-GCGCTCTCGTACGGCATG 138867 | || |||||| |||||| ||| | || || | ||| || | |||| Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAG-TCAAAGGGCAAT 200186 Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927 | | | | || || || |||| || ||||| |||| | | | || | || | | Sbjct 200185 CTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTC 200126 Query 138928 AGATTTGACGCTTTTGCGGCTTCGATA---GGATAATAGTTTACATCGATGATTTTGTTT 138984 | || || |||||| ||||| | || ||| |||| ||| |||||| |||| Sbjct 200125 ATGTTAGAT-CTTTTG--GCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTC 200069 Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043 || || || || ||||| || | | | || | | ||||| | ||| | | Sbjct 200068 AAGTTACGGGTAACAACCTTGGTAACTT-CATGAAGCTTCTCAAAGTTGTAC---CACAA 200013 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 ||||| | | | || ||||| | | || || || | ||| || || || Sbjct 200012 GTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGC 199953 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 || || || || | ||||||||||||||| ||||||||| | | ||||| Sbjct 199952 AACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGAC 199893 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 ||| || || | |||||| ||||| || || ||||||||||| | ||| | || || Sbjct 199892 ACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGT 199833 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT-----GTATT 139278 || ||||| ||| | ||| | |||| | | || | | ||| | || || Sbjct 199832 ACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTCTT 199773 Query 139279 TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCG 139338 | |||| ||| || || |||||||| ||||| | | | || || |||||| Sbjct 199772 TCTTCCACG----GTTT-TCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCG 199718 Query 139339 TAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398 || | || || | | | | || | |||| | | | | ||| | | ||| | Sbjct 199717 TAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGC 199658 Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458 | || | | |||| |||| || ||||||||||| || | |||||| | ||| || Sbjct 199657 TCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTC 199598 Query 139459 TTATCTTCCGAACCCATGTTACGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517 | |||||| ||| ||| | | || | || | | ||||||||| | || |||||||| Sbjct 199597 ATTTCTTCCTTACC-ATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCA 199539 Query 139518 TGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCG 139574 |||||||| ||| | ||| | ||| || | || || ||||| ||||| |||| || Sbjct 199538 TGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACG 199479 Query 139575 TACAGCATTATTGAATAC 139592 ||| |||||||| || Sbjct 199478 AGCAGTGTTATTGAAAAC 199461 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| |||||| | || || | || || ||||||||||| || || || ||| || Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| || ||||| || || || || || || Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGAC 1361385 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||| || || || || || | || ||| |||| | ||||| || Sbjct 1361384 CAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTAC 1361325 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || ||||| || | || ||| ||||| | || || Sbjct 1361324 AATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || ||||||||||| || || || ||| || | Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || || | || ||| |||| | ||||| || || Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | || ||| ||||| | || || Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || ||||||||||| || || || ||| || | Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || || | || ||| |||| | ||||| || || Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||||| || | || ||| ||||| | || || Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || | || || ||||||||||| || || || ||| || | Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||| || || || || || | || ||| |||| | ||||| || || Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||||| || | || ||| ||||| | || || Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047 >seq7 Length=860703 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||||||||| ||||| || || || || || | || Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || || || || || Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || || || ||||||| | | | || || || ||| Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || |||||||| || || || |||||||||||| ||||| | || || || Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTGG 37862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897487525600