Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq7 104 2e-17
>seq1
Length=2974285
Score = 107 bits (118), Expect = 2e-18
Identities = 692/1098 (63%), Gaps = 32/1098 (3%)
Strand=Plus/Minus
Query 138511 TGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGAT 138570
|| |||||||| |||||||||| | ||| || ||| ||| | || ||||| |
Sbjct 200542 TGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGGTTCAAAGCAC 200483
Query 138571 TCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAA 138630
|||||||| |||| || || | |||| || || |||||| || ||||| | |||
Sbjct 200482 TCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAACCAATAACGAA 200423
Query 138631 TTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688
|| | | ||| || ||| || || ||| | | |||||||||||| || |
Sbjct 200422 TTTCTAATACCATGCTTAGCCAATTT--TTGCTTTAATGTGTCCCAGTCCCACAACTCAC 200365
Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748
| || ||| ||| ||| | ||| ||||||||| ||| || ||| || ||||
Sbjct 200364 TGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGT 200305
Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808
| ||||| ||| | |||||||| ||| | || || || | ||||| | ||
Sbjct 200304 AACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACTGCACCGTGGT 200245
Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCG-GCGCTCTCGTACGGCATG 138867
| || |||||| |||||| ||| | || || | ||| || | ||||
Sbjct 200244 ACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAG-TCAAAGGGCAAT 200186
Query 138868 CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGC 138927
| | | | || || || |||| || ||||| |||| | | | || | || | |
Sbjct 200185 CTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTC 200126
Query 138928 AGATTTGACGCTTTTGCGGCTTCGATA---GGATAATAGTTTACATCGATGATTTTGTTT 138984
| || || |||||| ||||| | || ||| |||| ||| |||||| ||||
Sbjct 200125 ATGTTAGAT-CTTTTG--GCTTCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTC 200069
Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043
|| || || || ||||| || | | | || | | ||||| | ||| | |
Sbjct 200068 AAGTTACGGGTAACAACCTTGGTAACTT-CATGAAGCTTCTCAAAGTTGTAC---CACAA 200013
Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103
||||| | | | || ||||| | | || || || | ||| || || ||
Sbjct 200012 GTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATACAGC 199953
Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163
|| || || || | ||||||||||||||| ||||||||| | | |||||
Sbjct 199952 AACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGATGAC 199893
Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223
||| || || | |||||| ||||| || || ||||||||||| | ||| | || ||
Sbjct 199892 ACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATGGGGT 199833
Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT-----GTATT 139278
|| ||||| ||| | ||| | |||| | | || | | ||| | || ||
Sbjct 199832 ACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATAGTCTT 199773
Query 139279 TGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCG 139338
| |||| ||| || || |||||||| ||||| | | | || || ||||||
Sbjct 199772 TCTTCCACG----GTTT-TCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCG 199718
Query 139339 TAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCC 139398
|| | || || | | | | || | |||| | | | | ||| | | ||| |
Sbjct 199717 TAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGC 199658
Query 139399 TTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTC 139458
| || | | |||| |||| || ||||||||||| || | |||||| | ||| ||
Sbjct 199657 TCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTC 199598
Query 139459 TTATCTTCCGAACCCATGTTACGTT-TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCA 139517
| |||||| ||| ||| | | || | || | | ||||||||| | || ||||||||
Sbjct 199597 ATTTCTTCCTTACC-ATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCA 199539
Query 139518 TGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCG 139574
|||||||| ||| | ||| | ||| || | || || ||||| ||||| |||| ||
Sbjct 199538 TGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACG 199479
Query 139575 TACAGCATTATTGAATAC 139592
||| |||||||| ||
Sbjct 199478 AGCAGTGTTATTGAAAAC 199461
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||| |||||| | || || | || || ||||||||||| || || || ||| ||
Sbjct 1361504 ACAATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCC 1361445
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||| || ||||| || || || || || ||
Sbjct 1361444 TCTGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGAC 1361385
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | ||||| || || || || || | || ||| |||| | ||||| ||
Sbjct 1361384 CAGCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTAC 1361325
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| ||||| ||||| || ||||| || | || ||| ||||| | || ||
Sbjct 1361324 AATATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || ||||||||||| || || || ||| || |
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || || || || ||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||| || || || || || | || ||| |||| | ||||| || ||
Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||||||||| || || || || | || ||| ||||| | || ||
Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || ||||||||||| || || || ||| || |
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || || || || ||
Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||| || || || || || | || ||| |||| | ||||| || ||
Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| || ||||| || | || ||| ||||| | || ||
Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| |||||| | || || | || || ||||||||||| || || || ||| || |
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| || || || || || || ||
Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| | ||||| || || || || || | || ||| |||| | ||||| || ||
Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| || ||||| || | || ||| ||||| | || ||
Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047
>seq7
Length=860703
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | || || |||||||||| ||||| || || || || || | ||
Sbjct 37633 ATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 37692
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| || ||||| ||||| || || || || ||
Sbjct 37693 GACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 37752
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
||| | ||||| ||||| || || || ||||||| | | | || || || |||
Sbjct 37753 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTACAAC 37812
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933
|| |||||||| || || || |||||||||||| ||||| | || || ||
Sbjct 37813 ATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTGG 37862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897487525600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |