Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7 129 5e-25 seq1 129 5e-25 >seq7 Length=860703 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || |||||| ||||| || || || ||||| ||||| || || | | Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || | ||| || |||||| | |||||||||||||| || || ||| Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || ||||| || ||| || | |||||| | || | ||||| ||| || || Sbjct 37739 ATACCTTCCTTGTCCTG-AATCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCAC 37681 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || |||||||| || || || || ||||| Sbjct 37680 CTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 >seq1 Length=2974285 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | ||||||||| || || |||||||| || || || | Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGAT 1360650 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | |||||||| ||||| || || ||| Sbjct 1360651 AACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360710 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | ||||||||| ||| || Sbjct 1360711 ATACCCTCCTTGTCCTG-AATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAAC 1360769 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 1360770 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 122 bits (134), Expect = 7e-23 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | |||||| || || || || ||||| || || || | Sbjct 1360819 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1360878 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | |||||||| ||||| || || ||| Sbjct 1360879 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360938 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | ||||||||| ||| || Sbjct 1360939 ATACCCTCCTTGTCCTG-AATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAAC 1360997 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 1360998 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 122 bits (134), Expect = 7e-23 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | |||||| || || || || ||||| || || || | Sbjct 1361047 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361106 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | |||||||| ||||| || || ||| Sbjct 1361107 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361166 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | ||||||||| ||| || Sbjct 1361167 ATACCCTCCTTGTCCTG-AATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAAC 1361225 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 1361226 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || || | |||||| || || || || ||||| || || || | Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361334 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || | ||| || ||||| | |||||||| ||||| || || ||| Sbjct 1361335 AACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1361394 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | ||||| | || | ||||||||| ||| || Sbjct 1361395 ATACCCTCCTTGTCCTG-AATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAAC 1361453 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || |||||||| ||||| ||||| || ||||| || |||||| Sbjct 1361454 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219106102820