Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq5 179 9e-40
seq1 143 6e-29
seq7 113 1e-19
seq4 98.7 2e-15
seq6 89.7 1e-12
>seq5
Length=1501106
Score = 179 bits (198), Expect = 9e-40
Identities = 365/541 (67%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429
|||||| |||||| | | || || ||||| |||||||| | | | |||| ||||
Sbjct 761285 CCTCAATTTATGTTTTTGAGGGTGGCAATTGGCATTCATGGCGAAAACTTAAAAGATGTT 761344
Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489
|||| ||||| | | |||| | | |||||||||| | || || || | |
Sbjct 761345 GCTGAAACATATGACCTCATGTCAAAAAGGTATTTTATTCATGCTTCACCCACTCTCTAT 761404
Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTT----CTTGCTTTCTTCTAGGAATTAACGA 110545
|||||||||||| || |||| ||| ||||||||||| | | ||| | ||
Sbjct 761405 AACGCAGGAACTGATTTT----AATTTTCTTTCTTCTTGCTTTCTTTTGGCAATGGAAGA 761460
Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605
|||||||||||| || || || | || | | | |||||||||||||||||| ||
Sbjct 761461 TGATTCTATTGACGGAATATACAAAACTTTGCACAAGACTGCTCTTATTTCTAAAGGATC 761520
Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665
||| ||||| || | || ||||| || |||| || ||| | | ||||| | |
Sbjct 761521 TGGTGGAATAGGCTTACATATTCATAATGTTCGGGGTAATGGATCCTACATCGCTAGCTC 761580
Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725
|| || | ||||||||| | |||| ||||| |||| ||||| || ||||||| |||
Sbjct 761581 AAATGGAACATCAACTGGAATAATTCCCATGTTGCGAGTATTCAATGAAACTGCAAGATA 761640
Query 110726 TGTGAATCAAGGTGGTA---AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782
||| ||||||| |||| |||| || | ||||| | || | || || |||||
Sbjct 761641 TGTTGATCAAGGAGGTAGTCGGAGACCAGGTGCTTTTGCAGTATACATTGAGCCATGGCA 761700
Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842
|| |||||||| || | | | | |||||||| || ||||| || |
Sbjct 761701 TTGTGATATATTCGATGTACTCAATTTAAAGAAAAATCACGGCAAACAAGAAATGCGAAC 761760
Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902
| ||||||||||||| | | ||||| || |||||||||||||| | ||| | ||||
Sbjct 761761 CAGAGATTTATTTTATGGACTATGGATATCCGATTTATTCATGAAGAGAGTTAAGCAAAA 761820
Query 110903 T 110903
|
Sbjct 761821 T 761821
>seq1
Length=2974285
Score = 143 bits (158), Expect = 6e-29
Identities = 326/487 (67%), Gaps = 5/487 (1%)
Strand=Plus/Plus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||| || | || |||||| | | | || || |||||||||||||| ||||||||||||
Sbjct 199269 CAAATGTCCTCGTGCTTTTTGATTGCTATGAAAGATGATTCTATTGACGGTATTTATGAT 199328
Query 110571 GCTCTTAAAGA-AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629
| ||| |||| | ||| | ||||| || | ||||||| |||||| | ||| | ||
Sbjct 199329 AC-CTTGAAGACATGTGCCTTGATTTCCAAGAGTGCTGGAGGTATTGGTTTACACATACA 199387
Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689
| |||||||| | || || | || || | || ||| | || | ||| | |
Sbjct 199388 CAACATTCGCTCGACTGGTGCCTACATTGCTGGTACCAACGGTACCTCTAATGGTATCAT 199447
Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAG 110746
||| ||| | ||||| ||||| ||||||| || ||| |||| ||||| ||||||
Sbjct 199448 TCCTATGGTTAGAGTTTTCAATAACACTGCTCGTTACGTGGATCAGGGTGGTAATAAGAG 199507
Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806
| || ||||||| | ||| | ||||| ||||| | ||||| ||||| ||| | ||
Sbjct 199508 ACCCGGTGCATTTGCCTTATATTTGGAACCATGGCACGCGGATATCTTTGATTTCATCGA 199567
Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866
|| | || ||||| || |||||| || ||| | ||||| || ||| ||||
Sbjct 199568 TATTAGAAAGAATCATGGTAAGGAAGAAATGAGGGCAAGAGATTTGTTCCCAGCATTGTG 199627
Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926
|||| | || || || ||||| | ||| | | |||| |||| | | | | |||
Sbjct 199628 GATTCCTGACTTGTTTATGAAGAGAGTTGAGCAGAATGCTGAGTGGACCTTGTTCTCTCC 199687
Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986
| || | | ||| | || ||||| || || | |||||||| | | ||||| ||
Sbjct 199688 TAATGAGGCCCAAGGTTTGTCCGATGTTTACGGTGATGAGTTTGAGGCATTGTACGAGAA 199747
Query 110987 ATATGAA 110993
|| |||
Sbjct 199748 GTACGAA 199754
Score = 104 bits (114), Expect = 6e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 279870 TAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAAT 279929
|| ||||||| | |||||| ||| |||||| | | || |||||||||| | |||
Sbjct 1617170 TATTGGATGGGCTTAAACCTGGACAACGTAAGGTATTGTTTGGTTGTTTCAAGAAAAACC 1617111
Query 279930 TGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989
| ||| |||||| ||||||||||||| |||||||| || ||||| || |||||
Sbjct 1617110 TTAAAAATGAAATTAAAGTTGCTCAGTTAGTTGGTTATGTATCTGAACAAGCCCATTATC 1617051
Query 279990 ATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTT 280049
|||| |||||| ||| | | | ||| | || | |||||| ||||||| | |
Sbjct 1617050 ATCATGGTGAACAATCTTTGATTACTACAATTATTGGATTGGCCCAAAATTTTATTGGAT 1616991
Query 280050 CAAACAACTTAAATCTGCTTTCACCAAATGGT 280081
||||||| ||||| | | ||||||||||
Sbjct 1616990 CAAACAATATAAATATCTTAAAACCAAATGGT 1616959
Score = 87.8 bits (96), Expect = 4e-12
Identities = 257/383 (67%), Gaps = 41/383 (11%)
Strand=Plus/Minus
Query 279073 AAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGA---ATGTGCT-TTAT 279128
|||||| | |||||||||| | || |||| ||| | ||| |||| || ||||
Sbjct 1617985 AAAACTAGTTGATGCAAACAGAGC---AGGTACAAAAGATGGAGATAAATGTACTCTTAT 1617929
Query 279129 TTCTTACTGAGGGAGATTCTGCTGCTA-CATTTGCGATTGCTGGTTTATCTGTTATTGGT 279187
|| | || |||||||||||||| | || |||| || |||| || || ||||||| |||
Sbjct 1617928 TT-TAACAGAGGGAGATTCTGC-GTTATCATTGGCTGTTGCAGGGTTGGCTGTTATAGGT 1617871
Query 279188 CGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATC 279247
| ||| | |||||| ||||||||||||||||| || | ||| || | | || |
Sbjct 1617870 AGAGATTATTATGGCTGTTTTCCTTTAAGAGGTAAGTTACTCAAT----GTCAGAGAAGC 1617815
Query 279248 ACAACACAG-GCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAAT---TTAAA 279303
|| ||| | |||| || || ||||| ||| |||||| |||||
Sbjct 1617814 -CAGTGCAGATCAAGTTTCAA--AA---------AATGCCGAA---ATTAATGCATTAAA 1617770
Query 279304 ACAAATATTGGGATTAGAGC-----AAGGTAAAAAATACAAAGATACATC--AAGTTTAC 279356
||||| | || ||| | | ||||| | | || | ||||| ||| |||
Sbjct 1617769 GCAAATTATTGGTTTACAACACAAGAAGGTTTACTCT-CAGGAAAACATCAAAAGCTTAA 1617711
Query 279357 GATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGAT 279416
|||||||| | ||||| ||| ||||||| |||||| |||||| || |||||||| |
Sbjct 1617710 GATATGGTCACATTATGATTATGACAGATCAAGATCAAGATGGTTCCCATATTAAAGGCT 1617651
Query 279417 TAATACTTAATTGGGTTGATACT 279439
| || | |||| |||| |||
Sbjct 1617650 TGATCATAAATTTTCTTGAAACT 1617628
>seq7
Length=860703
Score = 113 bits (124), Expect = 1e-19
Identities = 119/152 (78%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395
|||||||| || || ||| |||||| | ||||||| || ||||| | | ||||| ||||
Sbjct 98938 TTCAATAGACAGCCGTCATTGCATAGATTGTCTATTTTGTCTCATTATG-CAAAG-ATTA 98881
Query 305396 T---CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452
||||| |||||| || | |||| | ||| |||||| || |||||||| ||||||
Sbjct 98880 GACCCTGGAGA-ACATTTAGACTTAATGAATGTGTTTGTACTCCCTATAATGCCGATTTT 98822
Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| || |||||||||||| ||||||| |||||
Sbjct 98821 GACGGTGATGAAATGAATTTGCATGTGCCTCA 98790
>seq4
Length=1642203
Score = 98.7 bits (108), Expect = 2e-15
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368
||||||| || || || ||| | || || | ||||| || ||||||||||||||
Sbjct 1590518 CATTTGATGGATAACGACCCTGTTTTATTTAACCGTCAACCCTCGTTGCATAAAATGTCT 1590577
Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428
|||||||| |||| |||||| || | || | || ||| |||| ||| || ||
Sbjct 1590578 ATGATGGCCCATAGAGTCAAGGTTATGCCTTATTCTACTTTTAGATTGAATTTATCTGTA 1590637
Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487
| ||||||||||| ||||| ||||| ||||| |||||| |||| || ||||| ||
Sbjct 1590638 ACATCACCTTATAATGCCGATTTCGATGGTGATGAGATGAATTTGCACGTTCCTCAGTC 1590696
>seq6
Length=1507273
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/116 (78%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297
|||| | | |||| ||||||||||||||| | || ||||||||||| ||||| | ||||
Sbjct 1342684 TCATCATAGCACCTGCATTATCGAATTCA-CCACAGTAATTTGGTGCCGAAAAGAGAGTA 1342742
Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
||||||| || || | || || || |||||||| || || || | |||||||||
Sbjct 1342743 ACTAATTGGCGTTTTGAGAAAAACTCGTAACCATCCTCCACGACCTGATGGGCACG 1342798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186812495879220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |