Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 179 9e-40 seq1 143 6e-29 seq7 113 1e-19 seq4 98.7 2e-15 seq6 89.7 1e-12 >seq5 Length=1501106 Score = 179 bits (198), Expect = 9e-40 Identities = 365/541 (67%), Gaps = 11/541 (2%) Strand=Plus/Plus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 |||||| |||||| | | || || ||||| |||||||| | | | |||| |||| Sbjct 761285 CCTCAATTTATGTTTTTGAGGGTGGCAATTGGCATTCATGGCGAAAACTTAAAAGATGTT 761344 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489 |||| ||||| | | |||| | | |||||||||| | || || || | | Sbjct 761345 GCTGAAACATATGACCTCATGTCAAAAAGGTATTTTATTCATGCTTCACCCACTCTCTAT 761404 Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTT----CTTGCTTTCTTCTAGGAATTAACGA 110545 |||||||||||| || |||| ||| ||||||||||| | | ||| | || Sbjct 761405 AACGCAGGAACTGATTTT----AATTTTCTTTCTTCTTGCTTTCTTTTGGCAATGGAAGA 761460 Query 110546 TGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTC 110605 |||||||||||| || || || | || | | | |||||||||||||||||| || Sbjct 761461 TGATTCTATTGACGGAATATACAAAACTTTGCACAAGACTGCTCTTATTTCTAAAGGATC 761520 Query 110606 TGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGC 110665 ||| ||||| || | || ||||| || |||| || ||| | | ||||| | | Sbjct 761521 TGGTGGAATAGGCTTACATATTCATAATGTTCGGGGTAATGGATCCTACATCGCTAGCTC 761580 Query 110666 GAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || || | ||||||||| | |||| ||||| |||| ||||| || ||||||| ||| Sbjct 761581 AAATGGAACATCAACTGGAATAATTCCCATGTTGCGAGTATTCAATGAAACTGCAAGATA 761640 Query 110726 TGTGAATCAAGGTGGTA---AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 ||| ||||||| |||| |||| || | ||||| | || | || || ||||| Sbjct 761641 TGTTGATCAAGGAGGTAGTCGGAGACCAGGTGCTTTTGCAGTATACATTGAGCCATGGCA 761700 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 || |||||||| || | | | | |||||||| || ||||| || | Sbjct 761701 TTGTGATATATTCGATGTACTCAATTTAAAGAAAAATCACGGCAAACAAGAAATGCGAAC 761760 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 | ||||||||||||| | | ||||| || |||||||||||||| | ||| | |||| Sbjct 761761 CAGAGATTTATTTTATGGACTATGGATATCCGATTTATTCATGAAGAGAGTTAAGCAAAA 761820 Query 110903 T 110903 | Sbjct 761821 T 761821 >seq1 Length=2974285 Score = 143 bits (158), Expect = 6e-29 Identities = 326/487 (67%), Gaps = 5/487 (1%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || |||||| | | | || || |||||||||||||| |||||||||||| Sbjct 199269 CAAATGTCCTCGTGCTTTTTGATTGCTATGAAAGATGATTCTATTGACGGTATTTATGAT 199328 Query 110571 GCTCTTAAAGA-AACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCA 110629 | ||| |||| | ||| | ||||| || | ||||||| |||||| | ||| | || Sbjct 199329 AC-CTTGAAGACATGTGCCTTGATTTCCAAGAGTGCTGGAGGTATTGGTTTACACATACA 199387 Query 110630 TGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 | |||||||| | || || | || || | || ||| | || | ||| | | Sbjct 199388 CAACATTCGCTCGACTGGTGCCTACATTGCTGGTACCAACGGTACCTCTAATGGTATCAT 199447 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAG 110746 ||| ||| | ||||| ||||| ||||||| || ||| |||| ||||| |||||| Sbjct 199448 TCCTATGGTTAGAGTTTTCAATAACACTGCTCGTTACGTGGATCAGGGTGGTAATAAGAG 199507 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 | || ||||||| | ||| | ||||| ||||| | ||||| ||||| ||| | || Sbjct 199508 ACCCGGTGCATTTGCCTTATATTTGGAACCATGGCACGCGGATATCTTTGATTTCATCGA 199567 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 || | || ||||| || |||||| || ||| | ||||| || ||| |||| Sbjct 199568 TATTAGAAAGAATCATGGTAAGGAAGAAATGAGGGCAAGAGATTTGTTCCCAGCATTGTG 199627 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 |||| | || || || ||||| | ||| | | |||| |||| | | | | ||| Sbjct 199628 GATTCCTGACTTGTTTATGAAGAGAGTTGAGCAGAATGCTGAGTGGACCTTGTTCTCTCC 199687 Query 110927 TCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAA 110986 | || | | ||| | || ||||| || || | |||||||| | | ||||| || Sbjct 199688 TAATGAGGCCCAAGGTTTGTCCGATGTTTACGGTGATGAGTTTGAGGCATTGTACGAGAA 199747 Query 110987 ATATGAA 110993 || ||| Sbjct 199748 GTACGAA 199754 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 279870 TAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAAT 279929 || ||||||| | |||||| ||| |||||| | | || |||||||||| | ||| Sbjct 1617170 TATTGGATGGGCTTAAACCTGGACAACGTAAGGTATTGTTTGGTTGTTTCAAGAAAAACC 1617111 Query 279930 TGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989 | ||| |||||| ||||||||||||| |||||||| || ||||| || ||||| Sbjct 1617110 TTAAAAATGAAATTAAAGTTGCTCAGTTAGTTGGTTATGTATCTGAACAAGCCCATTATC 1617051 Query 279990 ATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTT 280049 |||| |||||| ||| | | | ||| | || | |||||| ||||||| | | Sbjct 1617050 ATCATGGTGAACAATCTTTGATTACTACAATTATTGGATTGGCCCAAAATTTTATTGGAT 1616991 Query 280050 CAAACAACTTAAATCTGCTTTCACCAAATGGT 280081 ||||||| ||||| | | |||||||||| Sbjct 1616990 CAAACAATATAAATATCTTAAAACCAAATGGT 1616959 Score = 87.8 bits (96), Expect = 4e-12 Identities = 257/383 (67%), Gaps = 41/383 (11%) Strand=Plus/Minus Query 279073 AAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGA---ATGTGCT-TTAT 279128 |||||| | |||||||||| | || |||| ||| | ||| |||| || |||| Sbjct 1617985 AAAACTAGTTGATGCAAACAGAGC---AGGTACAAAAGATGGAGATAAATGTACTCTTAT 1617929 Query 279129 TTCTTACTGAGGGAGATTCTGCTGCTA-CATTTGCGATTGCTGGTTTATCTGTTATTGGT 279187 || | || |||||||||||||| | || |||| || |||| || || ||||||| ||| Sbjct 1617928 TT-TAACAGAGGGAGATTCTGC-GTTATCATTGGCTGTTGCAGGGTTGGCTGTTATAGGT 1617871 Query 279188 CGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGATAAAATC 279247 | ||| | |||||| ||||||||||||||||| || | ||| || | | || | Sbjct 1617870 AGAGATTATTATGGCTGTTTTCCTTTAAGAGGTAAGTTACTCAAT----GTCAGAGAAGC 1617815 Query 279248 ACAACACAG-GCTGGTTTAAAGCAAGTAAATGCTAATGCTGAATTGATTAAT---TTAAA 279303 || ||| | |||| || || ||||| ||| |||||| ||||| Sbjct 1617814 -CAGTGCAGATCAAGTTTCAA--AA---------AATGCCGAA---ATTAATGCATTAAA 1617770 Query 279304 ACAAATATTGGGATTAGAGC-----AAGGTAAAAAATACAAAGATACATC--AAGTTTAC 279356 ||||| | || ||| | | ||||| | | || | ||||| ||| ||| Sbjct 1617769 GCAAATTATTGGTTTACAACACAAGAAGGTTTACTCT-CAGGAAAACATCAAAAGCTTAA 1617711 Query 279357 GATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAAGGAT 279416 |||||||| | ||||| ||| ||||||| |||||| |||||| || |||||||| | Sbjct 1617710 GATATGGTCACATTATGATTATGACAGATCAAGATCAAGATGGTTCCCATATTAAAGGCT 1617651 Query 279417 TAATACTTAATTGGGTTGATACT 279439 | || | |||| |||| ||| Sbjct 1617650 TGATCATAAATTTTCTTGAAACT 1617628 >seq7 Length=860703 Score = 113 bits (124), Expect = 1e-19 Identities = 119/152 (78%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||||| || || ||| |||||| | ||||||| || ||||| | | ||||| |||| Sbjct 98938 TTCAATAGACAGCCGTCATTGCATAGATTGTCTATTTTGTCTCATTATG-CAAAG-ATTA 98881 Query 305396 T---CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTT 305452 ||||| |||||| || | |||| | ||| |||||| || |||||||| |||||| Sbjct 98880 GACCCTGGAGA-ACATTTAGACTTAATGAATGTGTTTGTACTCCCTATAATGCCGATTTT 98822 Query 305453 GATGGAGATGAAATGAATATGCATGTACCTCA 305484 || || |||||||||||| ||||||| ||||| Sbjct 98821 GACGGTGATGAAATGAATTTGCATGTGCCTCA 98790 >seq4 Length=1642203 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||| || || || ||| | || || | ||||| || |||||||||||||| Sbjct 1590518 CATTTGATGGATAACGACCCTGTTTTATTTAACCGTCAACCCTCGTTGCATAAAATGTCT 1590577 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 |||||||| |||| |||||| || | || | || ||| |||| ||| || || Sbjct 1590578 ATGATGGCCCATAGAGTCAAGGTTATGCCTTATTCTACTTTTAGATTGAATTTATCTGTA 1590637 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 | ||||||||||| ||||| ||||| ||||| |||||| |||| || ||||| || Sbjct 1590638 ACATCACCTTATAATGCCGATTTCGATGGTGATGAGATGAATTTGCACGTTCCTCAGTC 1590696 >seq6 Length=1507273 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | |||| ||||||||||||||| | || ||||||||||| ||||| | |||| Sbjct 1342684 TCATCATAGCACCTGCATTATCGAATTCA-CCACAGTAATTTGGTGCCGAAAAGAGAGTA 1342742 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 ||||||| || || | || || || |||||||| || || || | ||||||||| Sbjct 1342743 ACTAATTGGCGTTTTGAGAAAAACTCGTAACCATCCTCCACGACCTGATGGGCACG 1342798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812495879220