Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq7 138 7e-28
seq1 93.3 3e-14
>seq7
Length=860703
Score = 138 bits (152), Expect = 7e-28
Identities = 170/230 (74%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||||||||| | |||||||| || ||||| ||| ||||| |||||||| || |
Sbjct 37861 CACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 37802
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || || || |||| |||||||| || || ||||||||||| | ||||| || | |
Sbjct 37801 AAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGG 37742
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | |||||| ||||| ||| || | | |||| ||| | ||||||| || |||
Sbjct 37741 GAATACCTTCCTTGTCCTGAATCTT-GGACTTGACATTGTCAATGGTGTCGGAAGACTCC 37683
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| |||| ||||| || ||||| ||||| || || || || || |||||
Sbjct 37682 ACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633
>seq1
Length=2974285
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | || || | ||| || || ||| ||||| || ||||| || ||
Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | | | || || ||||| || || || |||||||| | |||||| ||| | ||
Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| ||| || | | || | ||| | ||||| ||||| |
Sbjct 1360710 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACKTTGTCAATAGTGTCAGAGGATTCAA 1360768
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| || || ||||| || || || || || |||||||| ||||||
Sbjct 1360769 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1360818
Score = 87.8 bits (96), Expect = 1e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | || || | ||| || || ||| || || || ||||| || ||
Sbjct 1361274 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361333
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | | || || ||||| || || || |||||||| | |||||| ||| | ||
Sbjct 1361334 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361393
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| ||| || | | || | ||| | ||||| ||||| |
Sbjct 1361394 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACGTTGTCAATAGTGTCAGAGGATTCAA 1361452
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
| |||| || || ||||| || || || || ||||||||||| ||||| ||
Sbjct 1361453 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGT 1361504
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | || || | ||| || || ||| || || || ||||| || ||
Sbjct 1360818 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1360877
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | | || || ||||| || || || |||||||| | |||||| ||| | ||
Sbjct 1360878 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360937
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| ||| || | | || | ||| | ||||| ||||| |
Sbjct 1360938 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1360996
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| || || ||||| || || || || || |||||||| ||||||
Sbjct 1360997 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361046
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||||||||| | || || | ||| || || ||| || || || ||||| || ||
Sbjct 1361046 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361105
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | | || || ||||| || || || |||||||| | |||||| ||| | ||
Sbjct 1361106 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361165
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||| || ||||| ||| || | | || | ||| | ||||| ||||| |
Sbjct 1361166 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1361224
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| || || ||||| || || || || || |||||||| ||||||
Sbjct 1361225 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328703919878400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |