Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7 138 7e-28 seq1 93.3 3e-14 >seq7 Length=860703 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| | |||||||| || ||||| ||| ||||| |||||||| || | Sbjct 37861 CACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 37802 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || || |||| |||||||| || || ||||||||||| | ||||| || | | Sbjct 37801 AAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGG 37742 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| ||| || | | |||| ||| | ||||||| || ||| Sbjct 37741 GAATACCTTCCTTGTCCTGAATCTT-GGACTTGACATTGTCAATGGTGTCGGAAGACTCC 37683 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| ||||| || || || || || ||||| Sbjct 37682 ACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCAT 37633 >seq1 Length=2974285 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || | ||| || || ||| ||||| || ||||| || || Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | | || || ||||| || || || |||||||| | |||||| ||| | || Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | || | ||| | ||||| ||||| | Sbjct 1360710 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACKTTGTCAATAGTGTCAGAGGATTCAA 1360768 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || || || || |||||||| |||||| Sbjct 1360769 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1360818 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || | ||| || || ||| || || || ||||| || || Sbjct 1361274 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361333 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || ||||| || || || |||||||| | |||||| ||| | || Sbjct 1361334 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361393 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | || | ||| | ||||| ||||| | Sbjct 1361394 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACGTTGTCAATAGTGTCAGAGGATTCAA 1361452 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | |||| || || ||||| || || || || ||||||||||| ||||| || Sbjct 1361453 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGT 1361504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || | ||| || || ||| || || || ||||| || || Sbjct 1360818 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1360877 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || ||||| || || || |||||||| | |||||| ||| | || Sbjct 1360878 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360937 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | || | ||| | ||||| ||||| | Sbjct 1360938 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1360996 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || || || || |||||||| |||||| Sbjct 1360997 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361046 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || | ||| || || ||| || || || ||||| || || Sbjct 1361046 ACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGA 1361105 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | || || ||||| || || || |||||||| | |||||| ||| | || Sbjct 1361106 TAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361165 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | || | ||| | ||||| ||||| | Sbjct 1361166 AATACCCTCCTTGTCCTGAATCTT-GGACTTGACRTTGTCAATAGTGTCAGAGGATTCAA 1361224 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || || || || |||||||| |||||| Sbjct 1361225 CCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703919878400