Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=2974285 Score = 104 bits (114), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | || || | || || ||| || Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || || |||||||| || || || ||| Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || ||| | |||| || || || ||| | ||||||| |||| || | | || ||||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAAC-GTTATCAGACTACAA 1360639 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||| || || || ||||| | || || ||||||||||| || Sbjct 1360638 TATTCAAAAGGAGTCTACGCTTCATCTTGTATTGAGATTGAGAGGTGG 1360591 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || || || |||||| | || || | || || ||| || Sbjct 1361501 ATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361442 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || || |||||||| || || || ||| Sbjct 1361441 GACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361382 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || ||| | |||| || || || ||| | ||||||| |||| || | | || ||||| Sbjct 1361381 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAAC-GTTATCAGACTACAA 1361323 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||| || || || || ||||| | || || ||||||||||| || Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361275 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | || || | || || ||| || Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || || |||||||| || || || ||| Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || ||| | |||| || || || ||| | ||||||| |||| || | | || ||||| Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAAC-GTTATCAGACTACAA 1360867 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||| || || || || ||||| | || || ||||||||||| || Sbjct 1360866 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1360819 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || |||||| | || || | || || ||| || Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| || || |||||||| || || || ||| Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || ||| | |||| || || || ||| | ||||||| |||| || | | || ||||| Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAAC-GTTATCAGACTACAA 1361095 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||| || || || || ||||| | || || ||||||||||| || Sbjct 1361094 TATTCAGAAGGAGTCTACACTTCATCTTGTATTGAGATTGAGAGGTGG 1361047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094288726400