Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 114 1e-20 seq1 104 2e-17 >seq7 Length=860703 Score = 114 bits (126), Expect = 1e-20 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 35499 TCTCTTTATTTCCACCACGT---AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAA 35555 |||||| || ||||||| | || ||||||||||| || | ||| ||||||||| | Sbjct 37872 TCTCTTC-TTACCACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGA 37814 Query 35556 TGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCT 35615 ||||||| || | | || || |||| |||| |||||||| ||||| ||||| | | Sbjct 37813 TGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTT 37754 Query 35616 GCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGT 35675 ||||||| | |||| | ||||||||| ||||| ||| | | | | | |||| Sbjct 37753 GCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGT 37694 Query 35676 CGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || || |||||||| | ||||| || ||||| || || || || || || || |||| Sbjct 37693 CGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCA 37634 Query 35736 T 35736 | Sbjct 37633 T 37633 >seq1 Length=2974285 Score = 104 bits (114), Expect = 2e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| || | ||| | |||| |||||||||||| ||||| || | Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGAT 1360650 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || |||| | || || | |||||||| || || ||||| | ||||||||| | ||| Sbjct 1360651 AACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGA 1360710 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | ||| | | ||||| ||||| || Sbjct 1360711 ATACCCTCCTTGTCCTGAATCTTGGACTTGA-CKTTGTCAATAGTGTCAGAGGATTCAAC 1360769 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || ||||| || ||||| || || ||||| || ||||| Sbjct 1360770 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793487301600