Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 322 7e-83
seq5 167 3e-36
>seq1
Length=2974285
Score = 322 bits (356), Expect = 7e-83
Identities = 1256/1944 (65%), Gaps = 48/1944 (2%)
Strand=Plus/Minus
Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766
|| || || ||||| ||||| |||| || ||||| | | ||| ||||| || ||
Sbjct 200554 GGGTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAG 200495
Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826
||||| | | || || || |||| ||||| | ||| ||||| || ||||| || ||
Sbjct 200494 GGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCA 200435
Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAA-TC 68885
|||||||| |||||||| |||||| | | ||| | |||| |||| ||| | ||
Sbjct 200434 ACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTA-ATGTGTCCCAGTC 200376
Query 68886 CCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATA 68945
||| | ||| || | ||||||||| | |||| | || || ||
Sbjct 200375 CCACAACTCACTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGG 200316
Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005
|| || | || |||| |||| || || | || | ||| ||| || || |
Sbjct 200315 AGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCAC 200256
Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065
|||||||| || || ||||||||||||| |||| | ||| |||| | | ||
Sbjct 200255 TGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTC 200196
Query 69066 GAATGGATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAAC-CCCAATACCGATA 69123
|| || ||| | || | ||||| ||||||||||| ||||| || |||||| | ||
Sbjct 200195 AAAGGGC-AATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCA-ATT 200138
Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183
||||||| ||| | || || |||| |||||||||| || ||| | ||| ||| ||
Sbjct 200137 GGTCTATTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATG 200078
Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT----- 69238
||| | || | || ||| || || || || || | || || ||| |
Sbjct 200077 ATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTAC 200018
Query 69239 --CAAATCGT--CCATCTAT---AACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291
||| | || | ||| | ||||||| ||||| | |||||| | |||||
Sbjct 200017 CACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACAT 199958
Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351
|| || ||||||| | | |||| | || || ||| | ||| | |||||
Sbjct 199957 ACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTG 199898
Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411
|| |||| || | |||||| | ||||| || || || || ||||| | || ||
Sbjct 199897 ATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAAT 199838
Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471
|| ||||| ||||| | || | || | ||| | | ||| | | ||| || ||
Sbjct 199837 GGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATA 199778
Query 69472 A-CGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCT 69528
| |||| | || || || ||| || || | ||| | ||| || || |||||
Sbjct 199777 GTCTTTCTTCCA-CGGTTTTCACGTTCGTACTTCTCGTACAATGCC--TCAAACTCATCA 199721
Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588
|| ||||||| ||| || | ||||| ||| | | ||| | |||| || |||
Sbjct 199720 CCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTC 199661
Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648
| || ||||| |||||||| | || |||||||| | ||| || | |||||| |
Sbjct 199660 TGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCC 199601
Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708
|| ||||||| || || ||| ||| ||| ||||| || || | ||||| | |||
Sbjct 199600 CTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGC 199541
Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768
|||||||| | ||||| || | | || |||| ||||| || |||||||| | |||
Sbjct 199540 CATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAA 199481
Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828
| ||||||||||| | ||||| | ||| ||||| ||||||||||| |||| || ||
Sbjct 199480 CGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTA 199421
Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888
|||| ||| || || | | |||||| || || || ||| || ||||| ||
Sbjct 199420 CCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCA 199361
Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948
| || || || | ||||| ||||| || ||||| ||||| || || |||||||
Sbjct 199360 CTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCT 199301
Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008
|||| || | ||| || ||||||||| | | || || |||||||| ||
Sbjct 199300 TTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAA 199241
Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068
||||| || |||| || || | | | || | || |||||| ||||||| |||
Sbjct 199240 GTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAA----TGAC 199185
Query 70069 TCT----ATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123
||| || || ||| |||||| || || || || | ||| | | ||||||||||
Sbjct 199184 TCTGGGAATGTCGTCAC-CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTC 199126
Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183
|||| | ||| ||| ||| | || ||||| ||| | || | |||||| || ||||
Sbjct 199125 TTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAA 199066
Query 70184 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATT 70243
| || ||||| ||| || | || | | ||| |||| | | | ||| || |
Sbjct 199065 AGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACT 199006
Query 70244 TGGTAACTATATCCATAACAGT-AGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGA 70302
|||||| || | | || | | ||||| || || || | |||| |||| ||
Sbjct 199005 TGGTAATAATGT-CGTATGTTTCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGG 198947
Query 70303 TTAACATAGTTGAATAAATCTTCCATTAC-ATCACT---AAATAGtttttttGTTTCCTT 70358
|||||||||| ||| | || | |||| | |||| ||| | ||| | |||| ||
Sbjct 198946 TTAACATAGT--CATACAACT--CCTTACTAACACTTGAAAACTGCTTTGTAGTTTGTTT 198891
Query 70359 GTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGT 70418
||| || || || | || ||||| ||||| | |||||||| || || || |||||
Sbjct 198890 GTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT 198831
Query 70419 ACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTAT 70477
|| ||| || || | || || ||||| |||| | || ||||| ||||| || | |
Sbjct 198830 -CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGT 198772
Query 70478 ATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGAC 70537
| | ||| ||||||| | | |||| | | ||| | | | | || | |
Sbjct 198771 ACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGC 198712
Query 70538 CATAACATAAT-TTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCTTATTT 70596
||||||||||| | | || | | || |||||||||||||| ||| ||| ||
Sbjct 198711 CATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGA 198653
Query 70597 CCACTTCGTTTAATGACGTACATT 70620
||| || ||||| || ||||||
Sbjct 198652 CCATGTCTTTTAACCACATACATT 198629
Score = 242 bits (268), Expect = 5e-59
Identities = 595/895 (66%), Gaps = 14/895 (2%)
Strand=Plus/Minus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
|||||| || |||||||| |||| ||| | || |||||||| || || || ||| |
Sbjct 233331 CATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGC 233272
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432
||| || || |||||||| || ||||| |||||||| |||| || |||| ||
Sbjct 233271 CAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCC 233212
Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492
|||| | || ||||| || |||||||| || | ||| ||||| || ||| ||
Sbjct 233211 TAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTT 233152
Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552
||| || | | || || | ||| || || | |||||| ||||| || | |||||
Sbjct 233151 CATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGC 233092
Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT--AAATGTTTAAAC 39610
|||||| || ||| || | || || |||| | || | || || ||
Sbjct 233091 CTCTGTGATAATCTTCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAGTGGGAGAAT 233034
Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670
| ||||| || || || || | |||||||| | | ||||| ||||| || ||
Sbjct 233033 AACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAA 232974
Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA 39730
|| | |||||||| | || | ||| || | |||||| |||| ||||| ||||||
Sbjct 232973 GTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTG 232914
Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC--GTAA---CTTGTAT 39785
||||| || ||||| || || |||||||||||||| | || || ||| || | |
Sbjct 232913 AAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCG--T 232856
Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845
||| | ||||| ||||| ||||| ||||| || | ||||| || || || |
Sbjct 232855 CATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAA 232796
Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905
||||||| || | | | | | || | || || | ||| || || || ||||
Sbjct 232795 TAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGG 232736
Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965
|| | ||||| ||||| ||||| ||| || || || |||||||| ||| | ||||
Sbjct 232735 AGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTT 232676
Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025
| | ||| || ||||| | | | || | ||| |||| || || || || || |||||
Sbjct 232675 CTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGG 232616
Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TT 40082
||| || ||||||||||| | | | ||| || | || | | |||| |
Sbjct 232615 AAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGAT 232556
Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142
| |||||||||| | |||||| | ||| | ||| || || |||||||| || || |
Sbjct 232555 TGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTT 232496
Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
|||| || |||||||| | ||| || || | |||| || || |||| ||||||
Sbjct 232495 CTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441
>seq5
Length=1501106
Score = 167 bits (184), Expect = 3e-36
Identities = 440/670 (66%), Gaps = 4/670 (1%)
Strand=Plus/Minus
Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579
|| |||||||| || ||| ||||| |||||| ||||| ||| | | |||||||||
Sbjct 761886 AAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCAT 761827
Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639
| || | |||||||| ||||| |||| ||||| ||||| || | ||| | |
Sbjct 761826 TCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAA 761767
Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699
|||||||||| |||||| || || |||||| || | || ||| | || | |||
Sbjct 761766 TCTCTGGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATA 761707
Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759
||| |||||||||| || | |||| || | | || |||| | | ||||| |||
Sbjct 761706 TCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGA 761647
Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819
|| | ||||| ||||| | ||| | |||| || ||| ||||| || ||| | ||| |
Sbjct 761646 TCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTT 761587
Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879
||||||| | || || || ||| | | |||| |||| |||| || ||||||
Sbjct 761586 CCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATT 761527
Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939
|| || | |||||| || |||||| | ||| || | ||||| || || ||
Sbjct 761526 CCACCAGATCCTTTAGAAATAAGAGCAGTCTTGTGCAAAGTTTTGTATATTCCGTCAATA 761467
Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999
||||||| ||| | |||||| || ||| | || | |||||| ||
Sbjct 761466 GAATCATCTTCCATTGCCAAAAGAAAGCAAGAAGAAAGAAAATTAAAATCAGTTCCTGCG 761407
Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059
||| | | || || || || ||| | || | ||| || | || | |||||||||
Sbjct 761406 TTATAGAGAGTGGGTGAAGCATGAATAAAATACCTTTTTGACATGAGGTCATATGTTTCA 761347
Query 70060 ATAGCTGATTCTA--TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117
| | || || | | | | |||||| || || || || | || |||||| |
Sbjct 761346 GCAACATCTTTTAAGTTTTCGCC--ATGAATGCCAATTGCCACCCTCAAAAACATAAATT 761289
Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177
||||| ||| | ||| || || |||||||| || ||||| |||| || |||||||
Sbjct 761288 GAGGTGTTTCAGCAATTTCATCATCAATTTTCAAAAGATATGACTTTTGCAATGTTTTAA 761229
Query 70178 ACCCAAAATA 70187
||||| ||
Sbjct 761228 CTCCAAAGTA 761219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908628272800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |