Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 322 7e-83 seq5 167 3e-36 >seq1 Length=2974285 Score = 322 bits (356), Expect = 7e-83 Identities = 1256/1944 (65%), Gaps = 48/1944 (2%) Strand=Plus/Minus Query 68707 GGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATAT 68766 || || || ||||| ||||| |||| || ||||| | | ||| ||||| || || Sbjct 200554 GGGTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAG 200495 Query 68767 GGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCC 68826 ||||| | | || || || |||| ||||| | ||| ||||| || ||||| || || Sbjct 200494 GGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCA 200435 Query 68827 ACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAA-TC 68885 |||||||| |||||||| |||||| | | ||| | |||| |||| ||| | || Sbjct 200434 ACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTA-ATGTGTCCCAGTC 200376 Query 68886 CCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATA 68945 ||| | ||| || | ||||||||| | |||| | || || || Sbjct 200375 CCACAACTCACTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGG 200316 Query 68946 TGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAA 69005 || || | || |||| |||| || || | || | ||| ||| || || | Sbjct 200315 AGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCAC 200256 Query 69006 TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATC 69065 |||||||| || || ||||||||||||| |||| | ||| |||| | | || Sbjct 200255 TGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTC 200196 Query 69066 GAATGGATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAAC-CCCAATACCGATA 69123 || || ||| | || | ||||| ||||||||||| ||||| || |||||| | || Sbjct 200195 AAAGGGC-AATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCA-ATT 200138 Query 69124 GGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 69183 ||||||| ||| | || || |||| |||||||||| || ||| | ||| ||| || Sbjct 200137 GGTCTATTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCAATG 200078 Query 69184 ATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT----- 69238 ||| | || | || ||| || || || || || | || || ||| | Sbjct 200077 ATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTAC 200018 Query 69239 --CAAATCGT--CCATCTAT---AACAAACATATTCAGTGCTACAGATGCTAGATTACAA 69291 ||| | || | ||| | ||||||| ||||| | |||||| | ||||| Sbjct 200017 CACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACAT 199958 Query 69292 ACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTG 69351 || || ||||||| | | |||| | || || ||| | ||| | ||||| Sbjct 199957 ACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTG 199898 Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 || |||| || | |||||| | ||||| || || || || ||||| | || || Sbjct 199897 ATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAAT 199838 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||||| ||||| | || | || | ||| | | ||| | | ||| || || Sbjct 199837 GGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTGATA 199778 Query 69472 A-CGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTCATCT 69528 | |||| | || || || ||| || || | ||| | ||| || || ||||| Sbjct 199777 GTCTTTCTTCCA-CGGTTTTCACGTTCGTACTTCTCGTACAATGCC--TCAAACTCATCA 199721 Query 69529 CCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCA 69588 || ||||||| ||| || | ||||| ||| | | ||| | |||| || ||| Sbjct 199720 CCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTC 199661 Query 69589 TCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTT 69648 | || ||||| |||||||| | || |||||||| | ||| || | |||||| | Sbjct 199660 TGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCC 199601 Query 69649 CTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGC 69708 || ||||||| || || ||| ||| ||| ||||| || || | ||||| | ||| Sbjct 199600 CTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGC 199541 Query 69709 CATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTAT 69768 |||||||| | ||||| || | | || |||| ||||| || |||||||| | ||| Sbjct 199540 CATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAA 199481 Query 69769 CTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTT 69828 | ||||||||||| | ||||| | ||| ||||| ||||||||||| |||| || || Sbjct 199480 CGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTA 199421 Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| ||| || || | | |||||| || || || ||| || ||||| || Sbjct 199420 CCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCA 199361 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 | || || || | ||||| ||||| || ||||| ||||| || || ||||||| Sbjct 199360 CTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCT 199301 Query 69949 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAAT 70008 |||| || | ||| || ||||||||| | | || || |||||||| || Sbjct 199300 TTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAA 199241 Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 ||||| || |||| || || | | | || | || |||||| ||||||| ||| Sbjct 199240 GTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAA----TGAC 199185 Query 70069 TCT----ATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| || || ||| |||||| || || || || | ||| | | |||||||||| Sbjct 199184 TCTGGGAATGTCGTCAC-CATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTC 199126 Query 70124 GTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAA 70183 |||| | ||| ||| ||| | || ||||| ||| | || | |||||| || |||| Sbjct 199125 TTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAA 199066 Query 70184 AATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATT 70243 | || ||||| ||| || | || | | ||| |||| | | | ||| || | Sbjct 199065 AGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACT 199006 Query 70244 TGGTAACTATATCCATAACAGT-AGGTGAGATAATCGGAGATCGTTTACCATTTTTAGGA 70302 |||||| || | | || | | ||||| || || || | |||| |||| || Sbjct 199005 TGGTAATAATGT-CGTATGTTTCCTGGGAGATCATAGGGGAGTGCAAACCAGTTTTGGGG 198947 Query 70303 TTAACATAGTTGAATAAATCTTCCATTAC-ATCACT---AAATAGtttttttGTTTCCTT 70358 |||||||||| ||| | || | |||| | |||| ||| | ||| | |||| || Sbjct 198946 TTAACATAGT--CATACAACT--CCTTACTAACACTTGAAAACTGCTTTGTAGTTTGTTT 198891 Query 70359 GTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGT 70418 ||| || || || | || ||||| ||||| | |||||||| || || || ||||| Sbjct 198890 GTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT 198831 Query 70419 ACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTAT 70477 || ||| || || | || || ||||| |||| | || ||||| ||||| || | | Sbjct 198830 -CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGT 198772 Query 70478 ATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGAC 70537 | | ||| ||||||| | | |||| | | ||| | | | | || | | Sbjct 198771 ACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGC 198712 Query 70538 CATAACATAAT-TTTCTAATACGAGATGTAATTTTATCAAACATAACATTCTCCTTATTT 70596 ||||||||||| | | || | | || |||||||||||||| ||| ||| || Sbjct 198711 CATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGA 198653 Query 70597 CCACTTCGTTTAATGACGTACATT 70620 ||| || ||||| || |||||| Sbjct 198652 CCATGTCTTTTAACCACATACATT 198629 Score = 242 bits (268), Expect = 5e-59 Identities = 595/895 (66%), Gaps = 14/895 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || |||||||| |||| ||| | || |||||||| || || || ||| | Sbjct 233331 CATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGC 233272 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCC 39432 ||| || || |||||||| || ||||| |||||||| |||| || |||| || Sbjct 233271 CAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCC 233212 Query 39433 TAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATT 39492 |||| | || ||||| || |||||||| || | ||| ||||| || ||| || Sbjct 233211 TAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTT 233152 Query 39493 CATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC 39552 ||| || | | || || | ||| || || | |||||| ||||| || | ||||| Sbjct 233151 CATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGC 233092 Query 39553 CTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAAT--AAATGTTTAAAC 39610 |||||| || ||| || | || || |||| | || | || || || Sbjct 233091 CTCTGTGATAATCTTCTCGACAATAGCAGCA-TCGG-GTCTGTTTTGCAAGTGGGAGAAT 233034 Query 39611 ATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAAT 39670 | ||||| || || || || | |||||||| | | ||||| ||||| || || Sbjct 233033 AACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAA 232974 Query 39671 GTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAA 39730 || | |||||||| | || | ||| || | |||||| |||| ||||| |||||| Sbjct 232973 GTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTG 232914 Query 39731 AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC--GTAA---CTTGTAT 39785 ||||| || ||||| || || |||||||||||||| | || || ||| || | | Sbjct 232913 AAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCG--T 232856 Query 39786 CATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTA 39845 ||| | ||||| ||||| ||||| ||||| || | ||||| || || || | Sbjct 232855 CATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAA 232796 Query 39846 TAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGAC 39905 ||||||| || | | | | | || | || || | ||| || || || |||| Sbjct 232795 TAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGG 232736 Query 39906 TATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTT 39965 || | ||||| ||||| ||||| ||| || || || |||||||| ||| | |||| Sbjct 232735 AGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTT 232676 Query 39966 CAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCAC 40025 | | ||| || ||||| | | | || | ||| |||| || || || || || ||||| Sbjct 232675 CTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGG 232616 Query 40026 TAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA---TT 40082 ||| || ||||||||||| | | | ||| || | || | | |||| | Sbjct 232615 AAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGAT 232556 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | |||||||||| | |||||| | ||| | ||| || || |||||||| || || | Sbjct 232555 TGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTT 232496 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||| || |||||||| | ||| || || | |||| || || |||| |||||| Sbjct 232495 CTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441 >seq5 Length=1501106 Score = 167 bits (184), Expect = 3e-36 Identities = 440/670 (66%), Gaps = 4/670 (1%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || |||||||| || ||| ||||| |||||| ||||| ||| | | ||||||||| Sbjct 761886 AAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACCAT 761827 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || | |||||||| ||||| |||| ||||| ||||| || | ||| | | Sbjct 761826 TCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATAAA 761767 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 |||||||||| |||||| || || |||||| || | || ||| | || | ||| Sbjct 761766 TCTCTGGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATATA 761707 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 ||| |||||||||| || | |||| || | | || |||| | | ||||| ||| Sbjct 761706 TCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTTGA 761647 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | ||||| ||||| | ||| | |||| || ||| ||||| || ||| | ||| | Sbjct 761646 TCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATGTT 761587 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 ||||||| | || || || ||| | | |||| |||| |||| || |||||| Sbjct 761586 CCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTATT 761527 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || || | |||||| || |||||| | ||| || | ||||| || || || Sbjct 761526 CCACCAGATCCTTTAGAAATAAGAGCAGTCTTGTGCAAAGTTTTGTATATTCCGTCAATA 761467 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 ||||||| ||| | |||||| || ||| | || | |||||| || Sbjct 761466 GAATCATCTTCCATTGCCAAAAGAAAGCAAGAAGAAAGAAAATTAAAATCAGTTCCTGCG 761407 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||| | | || || || || ||| | || | ||| || | || | ||||||||| Sbjct 761406 TTATAGAGAGTGGGTGAAGCATGAATAAAATACCTTTTTGACATGAGGTCATATGTTTCA 761347 Query 70060 ATAGCTGATTCTA--TATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCT 70117 | | || || | | | | |||||| || || || || | || |||||| | Sbjct 761346 GCAACATCTTTTAAGTTTTCGCC--ATGAATGCCAATTGCCACCCTCAAAAACATAAATT 761289 Query 70118 GAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAA 70177 ||||| ||| | ||| || || |||||||| || ||||| |||| || ||||||| Sbjct 761288 GAGGTGTTTCAGCAATTTCATCATCAATTTTCAAAAGATATGACTTTTGCAATGTTTTAA 761229 Query 70178 ACCCAAAATA 70187 ||||| || Sbjct 761228 CTCCAAAGTA 761219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908628272800