Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 194 1e-44 seq4 125 6e-24 >seq1 Length=2974285 Score = 194 bits (214), Expect = 1e-44 Identities = 411/603 (68%), Gaps = 24/603 (4%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || ||| |||| || || || |||||||||||||| |||||| | || Sbjct 232441 TTTGTTCTTTTCCCTATTAAATACCACGAGATTTGGCAAATGTACAAGAAAGCAGAAGCA 232500 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGA----TT 43813 || |||||||| ||||| ||| | |||||| |||||| | | || |||| | Sbjct 232501 TCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGACACTCATGAC--TGGAACAATC 232558 Query 43814 GCATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 || | || || || || | || || || ||||||| ||||| ||||| Sbjct 232559 GCTTGAACGACAACGAGCGTTTC--TTCATTTCCCGTATTTTGGCATTTTTCGCTGCTTC 232616 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 ||| || || || || || || ||||| || | | || || ||||| | |||| Sbjct 232617 CGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGCC-GAGGTTCAGATTCCAG 232675 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| ||| ||||| || || ||||| || |||||||| || || || | ||| Sbjct 232676 AAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATATCCACTCAGAGACCTACT 232735 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA----AT 44047 | |||| || || || ||||| || | ||| ||| || | |||| || Sbjct 232736 CCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAG--GCA--GACTTTTTATTCAAT 232791 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 || || || || | ||| || ||| | || || |||||||| | ||||| | | Sbjct 232792 GCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGCTTTACGCTGGATCAGT 232851 Query 44108 TCAAATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 | || | || ||| ||||| ||||| || ||||| | ||| ||||| |||||| Sbjct 232852 GATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTC 232911 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || ||||||||||| |||| |||||||| ||||| |||| ||||||||||| ||| Sbjct 232912 TTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTG 232971 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || || || |||||||| | |||||||| || || || |||||||||||||||| Sbjct 232972 ACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTG 233031 Query 44285 TTA 44287 ||| Sbjct 233032 TTA 233034 >seq4 Length=1642203 Score = 125 bits (138), Expect = 6e-24 Identities = 292/437 (67%), Gaps = 25/437 (6%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTAC- 19418 ||||| ||||| ||| ||| || |||||||| || | | | |||||| | | | Sbjct 456002 TATGGCCCACCTGGTACTGGTAAGACATTAATAGCCCGTAAGTTGAGTAAAATGTTGAAT 455943 Query 19419 --AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 |||| |||| ||| ||||| |||||||| || || || | |||| ||| ||| Sbjct 455942 GGAAAAGAACC---CAAGATTGTGAATGGTCCAGAGATGTTGAGCAAATTTGTGGGTGCT 455886 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGA--AGAAGAACAA---AAACGTT 19531 || ||||||||| | || |||||| || || || || || |||| ||| | Sbjct 455885 TCAGAAGAAAATATTCGTAATTTGTTCAAGGAAGCCGAGCAGGAGTACAAGCAAAAGGGA 455826 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 | | | | | |||| ||| |||| || | |||||||| || | | | |||| Sbjct 455825 GACGACTCTGA---TCTT--CACGTTATTATTTTTGATGAATTAGATTCTGTATTCAAGC 455771 Query 19592 AAAGAGGTTCTGGT---------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCC 19642 ||||||| || ||| | | |||||| |||| ||| || ||||| | Sbjct 455770 AAAGAGGGTCCGGTAAGTCTGATGGGACTGGAGTTGGCGACAATGTGGTTAATCAGTTGT 455711 Query 19643 TGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATA 19702 |||| || | || |||||| |||| || |||||| ||||| ||||||| |||||||||| Sbjct 455710 TGTCCAAGATGGATGGTGTTGACCAGCTCAATAATGTTTTAATTATTGGTATGACTAATA 455651 Query 19703 GACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAA 19762 || | || || || || || |||||||| || ||| | || || || |||| |||| Sbjct 455650 GATTAGACTTGATCGATTCTGCGTTATTACGTCCAGGTAGATTTGAGATTCAGATTGAAA 455591 Query 19763 TTAACTTACCCGATGAA 19779 || | | || |||||| Sbjct 455590 TTGCCCTCCCAGATGAA 455574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455903120100