Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 194 1e-44
seq4 125 6e-24
>seq1
Length=2974285
Score = 194 bits (214), Expect = 1e-44
Identities = 411/603 (68%), Gaps = 24/603 (4%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
||||| | || || ||| |||| || || || |||||||||||||| |||||| | ||
Sbjct 232441 TTTGTTCTTTTCCCTATTAAATACCACGAGATTTGGCAAATGTACAAGAAAGCAGAAGCA 232500
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGA----TT 43813
|| |||||||| ||||| ||| | |||||| |||||| | | || |||| |
Sbjct 232501 TCTTTTTGGACTGCAGAGGAAATCGATTTGGGAAAAGACACTCATGAC--TGGAACAATC 232558
Query 43814 GCATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872
|| | || || || || | || || || ||||||| ||||| |||||
Sbjct 232559 GCTTGAACGACAACGAGCGTTTC--TTCATTTCCCGTATTTTGGCATTTTTCGCTGCTTC 232616
Query 43873 CGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931
||| || || || || || || ||||| || | | || || ||||| | ||||
Sbjct 232617 CGATGGTATTGTTAACGAGAACTTGGTGGAGAACTTCTCTGCC-GAGGTTCAGATTCCAG 232675
Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991
|||| ||| ||||| || || ||||| || |||||||| || || || | |||
Sbjct 232676 AAGCCAAATGCTTTTACGGTTTCCAAATCATGATGGAAAATATCCACTCAGAGACCTACT 232735
Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA----AT 44047
| |||| || || || ||||| || | ||| ||| || | |||| ||
Sbjct 232736 CCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAG--GCA--GACTTTTTATTCAAT 232791
Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107
|| || || || | ||| || ||| | || || |||||||| | ||||| | |
Sbjct 232792 GCTATTGAGACTATTCCTTGCATCAAAAAGAAGGCTGACTGGGCTTTACGCTGGATCAGT 232851
Query 44108 TCAAATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164
| || | || ||| ||||| ||||| || ||||| | ||| ||||| ||||||
Sbjct 232852 GATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGCTGCTGTTGAAGGTATTTTC 232911
Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224
|| ||||||||||| |||| |||||||| ||||| |||| ||||||||||| |||
Sbjct 232912 TTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAGAGGCTTGATGCCTGGTTTG 232971
Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| || || || |||||||| | |||||||| || || || ||||||||||||||||
Sbjct 232972 ACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGGTTTGCACACCGATTTTGCTTGCTTG 233031
Query 44285 TTA 44287
|||
Sbjct 233032 TTA 233034
>seq4
Length=1642203
Score = 125 bits (138), Expect = 6e-24
Identities = 292/437 (67%), Gaps = 25/437 (6%)
Strand=Plus/Minus
Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTAC- 19418
||||| ||||| ||| ||| || |||||||| || | | | |||||| | | |
Sbjct 456002 TATGGCCCACCTGGTACTGGTAAGACATTAATAGCCCGTAAGTTGAGTAAAATGTTGAAT 455943
Query 19419 --AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476
|||| |||| ||| ||||| |||||||| || || || | |||| ||| |||
Sbjct 455942 GGAAAAGAACC---CAAGATTGTGAATGGTCCAGAGATGTTGAGCAAATTTGTGGGTGCT 455886
Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGA--AGAAGAACAA---AAACGTT 19531
|| ||||||||| | || |||||| || || || || || |||| ||| |
Sbjct 455885 TCAGAAGAAAATATTCGTAATTTGTTCAAGGAAGCCGAGCAGGAGTACAAGCAAAAGGGA 455826
Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591
| | | | | |||| ||| |||| || | |||||||| || | | | ||||
Sbjct 455825 GACGACTCTGA---TCTT--CACGTTATTATTTTTGATGAATTAGATTCTGTATTCAAGC 455771
Query 19592 AAAGAGGTTCTGGT---------GTAAATGGAGTACATGACACTGTTGTCAATCAACTCC 19642
||||||| || ||| | | |||||| |||| ||| || ||||| |
Sbjct 455770 AAAGAGGGTCCGGTAAGTCTGATGGGACTGGAGTTGGCGACAATGTGGTTAATCAGTTGT 455711
Query 19643 TGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATA 19702
|||| || | || |||||| |||| || |||||| ||||| ||||||| ||||||||||
Sbjct 455710 TGTCCAAGATGGATGGTGTTGACCAGCTCAATAATGTTTTAATTATTGGTATGACTAATA 455651
Query 19703 GACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAA 19762
|| | || || || || || |||||||| || ||| | || || || |||| ||||
Sbjct 455650 GATTAGACTTGATCGATTCTGCGTTATTACGTCCAGGTAGATTTGAGATTCAGATTGAAA 455591
Query 19763 TTAACTTACCCGATGAA 19779
|| | | || ||||||
Sbjct 455590 TTGCCCTCCCAGATGAA 455574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455903120100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |