Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=2974285 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | |||||| | ||| | |||||| || ||||||||||||||||| | | Sbjct 1360591 CCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGAT 1360650 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| | | ||||| | || ||||| ||| |||| | | ||| || || || || Sbjct 1360651 AACGTTCTTC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | || | |||||| | || |||||| Sbjct 1360710 AATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAAC 1360769 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || |||| || || ||||||||||||||| Sbjct 1360770 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1360818 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | |||||| | ||| | ||||| || || |||||||||||||| | | Sbjct 1361275 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361334 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| | || ||||| ||| |||| | | ||| || || || || Sbjct 1361335 AACGTTCTGC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361393 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | | || | |||||| | || |||||| Sbjct 1361394 AATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAAC 1361453 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||| || |||| || || |||||||||||||| Sbjct 1361454 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCAT 1361501 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | |||||| | ||| | ||||| || || |||||||||||||| | | Sbjct 1360819 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1360878 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| | || ||||| ||| |||| | | ||| || || || || Sbjct 1360879 AACGTTCTGC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360937 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | || | |||||| | || |||||| Sbjct 1360938 AATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAAC 1360997 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || |||| || || ||||||||||||||| Sbjct 1360998 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361046 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | |||||| | ||| | ||||| || || |||||||||||||| | | Sbjct 1361047 CCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGAT 1361106 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| | || ||||| ||| |||| | | ||| || || || || Sbjct 1361107 AACGTTCTGC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1361165 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | || | |||||| | || |||||| Sbjct 1361166 AATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAAC 1361225 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || |||| ||| || |||| || || ||||||||||||||| Sbjct 1361226 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCATA 1361274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 200/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 131639 TTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTA 131698 ||||| ||||||| |||||||||||| || || | ||| || || |||| |||||| Sbjct 199663 TTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTT 199604 Query 131699 GCTTTTTTCTCTTCTGTACCCATAAtttttttCAA-ATTTAAAAAGTCCAAAATGTCCGC 131757 || | | ||||| |||| || ||| ||| || || | || || || || ||||| Sbjct 199603 GCCCTCATTTCTTCCTTACC-ATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGC 199545 Query 131758 ATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTGCGCTTACCGCCTTGATTAAC 131814 ||||| ||||||||||| | || | ||| || | | ||||| || |||| || Sbjct 199544 GTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCAC 199485 Query 131815 ATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATT 131874 | |||| | |||| ||| | || | | ||| || | ||| || | | | || || Sbjct 199484 GTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTT 199425 Query 131875 GGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC 131934 ||| | ||||||| ||| | | | || ||||| | || | ||||||||||| Sbjct 199424 GGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCC 199365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934296422240