Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 228 1e-54 >seq1 Length=2974285 Score = 228 bits (252), Expect = 1e-54 Identities = 959/1498 (64%), Gaps = 21/1498 (1%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| || ||||| || | |||||| |||||| || | ||||| || Sbjct 200552 GTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGG 200493 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 ||||||||| || || |||||||| ||||| | ||||| || || ||||| || || | Sbjct 200492 TTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAAC 200433 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847 ||| | || | || ||| | || | || ||| | |||||||| | Sbjct 200432 CAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCA 200373 Query 110848 GT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905 | | || || || | ||||| | |||||||| | || || | ||| || ||| Sbjct 200372 CAACTCA-CTGGGCTTT-CTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGA 200315 Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965 || ||||| | |||| || ||||| | | | | |||||||| || || |||| Sbjct 200314 GACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACT 200255 Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025 | |||| ||||||||||| || || || ||||| || | |||| | || ||| Sbjct 200254 GCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCA 200195 Query 111026 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 111085 || | | | | ||||| |||| || | ||| || |||||||| |||| ||| Sbjct 200194 AAGGGCAATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGT 200135 Query 111086 CTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGA 111143 || | | ||| ||||| |||| | || ||| |||||| ||||| || | ||||||| Sbjct 200134 CTATTCCTCATGTTAGATCTTTTG-GC-TTCTGGAACGGGGTAAAAGTTACGATCAATGA 200077 Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA-----ATC 111198 || ||| | || |||||||| ||| || | ||||||||| || ||| | | | Sbjct 200076 TTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACC 200017 Query 111199 AAAAG-TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 111257 | ||| || | |||| | ||| || ||||| ||||| |||||||| || || | Sbjct 200016 ACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATA 199957 Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317 |||| |||||| | ||| || | |||||| ||| || |||||| || | Sbjct 199956 CAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGA 199897 Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377 | ||||| |||||||| ||| | || || ||||| ||||| ||||| | |||| | | Sbjct 199896 TGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATG 199837 Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACA 111436 | || || || || || || | | | ||| || | ||| || || | | || | | | Sbjct 199836 GGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTG-ATA 199778 Query 111437 ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 111496 | | | || || |||||||| ||| | || |||||||| ||||| Sbjct 199777 GTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCG 199718 Query 111497 ACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC 111556 | ||||| | |||| | |||| | ||| |||| | | ||| | | || | | Sbjct 199717 TAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGC 199658 Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 111616 ||||| | |||||| || | ||| |||||||||| | || || | |||||| || Sbjct 199657 TCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTC 199598 Query 111617 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 111676 ||||| | ||| || || || | || | ||| || | |||||||||||||||| Sbjct 199597 ATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCAT 199538 Query 111677 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 111733 || || | ||| | || | | || || | ||| | |||| || || || Sbjct 199537 GGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGA 199478 Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793 || ||| || || || | || ||| ||||| ||||||| || ||| || || || Sbjct 199477 GCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCA 199418 Query 111794 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCAC 111853 ||| | | | | | | | || ||||| | |||||||| ||||| | | Sbjct 199417 GCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTC 199358 Query 111854 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 111913 || || || ||||| | | | || |||| ||||||| || || || || || Sbjct 199357 TTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTC 199298 Query 111914 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 111973 | || || | ||||| |||||| || || | |||||||||||||| || | || Sbjct 199297 ATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTA 199238 Query 111974 GGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 112033 || | |||| | || | ||||||||| | | ||| || || | ||| | Sbjct 199237 GGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGA 199178 Query 112034 ATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATG 112093 ||||| || || || || || || || || | ||| | | || ||| || |||| | Sbjct 199177 ATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCG 199118 Query 112094 AGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 112150 | |||||| | | | ||| | || || |||| | ||||||| |||||||||| Sbjct 199117 ACTTTGCCATTAATTCTTAAAAGGTAAGATC-TCTCTAAAGTTTTGAAACCAAAGTAA 199061 Score = 96.9 bits (106), Expect = 4e-15 Identities = 216/322 (67%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 11533 ATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATT 11592 |||||||||||||||||| || | || ||||| | ||| | |||||| |||||||| Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338 Query 11593 TGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 | ||| |||| | | || || || | |||||||||||||||| |||| Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278 Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || | || || || ||| ||| | |||||| || | || || || Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATT 11771 ||||||||||||||||||||| | || | || |||| | ||||| || | || Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGA-AACTGACAAAAATGGAACGCCAGCTT 422159 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || | ||| || | || |||||||| ||||| || ||||| | || | Sbjct 422158 CACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAG 422099 Query 11832 CGCCTCGGGGGATCTTGGCACC 11853 | |||| || ||||||||||| Sbjct 422098 CACCTCTTGGAATCTTGGCACC 422077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031842992000