Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq1 228 1e-54
>seq1
Length=2974285
Score = 228 bits (252), Expect = 1e-54
Identities = 959/1498 (64%), Gaps = 21/1498 (1%)
Strand=Plus/Minus
Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727
||||||||| || ||||| || | |||||| |||||| || | ||||| ||
Sbjct 200552 GTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGTGTAGGG 200493
Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787
||||||||| || || |||||||| ||||| | ||||| || || ||||| || || |
Sbjct 200492 TTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGGAGCAAC 200433
Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 110847
||| | || | || ||| | || | || ||| | |||||||| |
Sbjct 200432 CAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTAATGTGTCCCAGTCCCA 200373
Query 110848 GT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGA 110905
| | || || || | ||||| | |||||||| | || || | ||| || |||
Sbjct 200372 CAACTCA-CTGGGCTTT-CTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGGCTGGA 200315
Query 110906 GAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGG 110965
|| ||||| | |||| || ||||| | | | | |||||||| || || ||||
Sbjct 200314 GACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTTCCACT 200255
Query 110966 GATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCA 111025
| |||| ||||||||||| || || || ||||| || | |||| | || |||
Sbjct 200254 GCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCGAGTCA 200195
Query 111026 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 111085
|| | | | | ||||| |||| || | ||| || |||||||| |||| |||
Sbjct 200194 AAGGGCAATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCAATTGGT 200135
Query 111086 CTGTGTCGCATATTAGA-CTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGA 111143
|| | | ||| ||||| |||| | || ||| |||||| ||||| || | |||||||
Sbjct 200134 CTATTCCTCATGTTAGATCTTTTG-GC-TTCTGGAACGGGGTAAAAGTTACGATCAATGA 200077
Query 111144 CTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA-----ATC 111198
|| ||| | || |||||||| ||| || | ||||||||| || ||| | | |
Sbjct 200076 TTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTGTACC 200017
Query 111199 AAAAG-TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 111257
| ||| || | |||| | ||| || ||||| ||||| |||||||| || || |
Sbjct 200016 ACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTACATA 199957
Query 111258 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAA 111317
|||| |||||| | ||| || | |||||| ||| || |||||| || |
Sbjct 199956 CAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGATTTGA 199897
Query 111318 TCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGG 111377
| ||||| |||||||| ||| | || || ||||| ||||| ||||| | |||| | |
Sbjct 199896 TGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACATGAATG 199837
Query 111378 GCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACA 111436
| || || || || || || | | | ||| || | ||| || || | | || | | |
Sbjct 199836 GGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATTTCTGAGCCTTG-ATA 199778
Query 111437 ATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC 111496
| | | || || |||||||| ||| | || |||||||| |||||
Sbjct 199777 GTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCCTCAAACTCATCACCG 199718
Query 111497 ACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCC 111556
| ||||| | |||| | |||| | ||| |||| | | ||| | | || | |
Sbjct 199717 TAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGC 199658
Query 111557 TCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGA 111616
||||| | |||||| || | ||| |||||||||| | || || | |||||| ||
Sbjct 199657 TCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTC 199598
Query 111617 GCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCAT 111676
||||| | ||| || || || | || | ||| || | ||||||||||||||||
Sbjct 199597 ATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGCGTGCCAT 199538
Query 111677 GGCTCAAGATAGACTGCGATAGATCCCTTTC---GACGCCCAGCTTGATTTACATAGCGC 111733
|| || | ||| | || | | || || | ||| | |||| || || ||
Sbjct 199537 GGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCACGTAACGA 199478
Query 111734 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 111793
|| ||| || || || | || ||| ||||| ||||||| || ||| || || ||
Sbjct 199477 GCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCA 199418
Query 111794 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCAC 111853
||| | | | | | | | || ||||| | |||||||| ||||| | |
Sbjct 199417 GCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCCAGCACTC 199358
Query 111854 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 111913
|| || || ||||| | | | || |||| ||||||| || || || || ||
Sbjct 199357 TTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTC 199298
Query 111914 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 111973
| || || | ||||| |||||| || || | |||||||||||||| || | ||
Sbjct 199297 ATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTA 199238
Query 111974 GGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCA 112033
|| | |||| | || | ||||||||| | | ||| || || | ||| |
Sbjct 199237 GGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGA 199178
Query 112034 ATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATG 112093
||||| || || || || || || || || | ||| | | || ||| || |||| |
Sbjct 199177 ATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCTTTCTGCG 199118
Query 112094 AGGATGCCATCGAGCCGTTGAAGAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAA 112150
| |||||| | | | ||| | || || |||| | ||||||| ||||||||||
Sbjct 199117 ACTTTGCCATTAATTCTTAAAAGGTAAGATC-TCTCTAAAGTTTTGAAACCAAAGTAA 199061
Score = 96.9 bits (106), Expect = 4e-15
Identities = 216/322 (67%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 11533 ATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATT 11592
|||||||||||||||||| || | || ||||| | ||| | |||||| ||||||||
Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338
Query 11593 TGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652
| ||| |||| | | || || || | |||||||||||||||| ||||
Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278
Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| || | || || || ||| ||| | |||||| || | || || ||
Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATT 11771
||||||||||||||||||||| | || | || |||| | ||||| || | ||
Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGA-AACTGACAAAAATGGAACGCCAGCTT 422159
Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831
|||| || | ||| || | || |||||||| ||||| || ||||| | || |
Sbjct 422158 CACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAG 422099
Query 11832 CGCCTCGGGGGATCTTGGCACC 11853
| |||| || |||||||||||
Sbjct 422098 CACCTCTTGGAATCTTGGCACC 422077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031842992000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |