Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 >seq1 Length=2974285 Score = 223 bits (246), Expect = 4e-53 Identities = 899/1406 (64%), Gaps = 39/1406 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||||||||| ||||| || ||||||||||| ||||||||||| ||||||| ||||| Sbjct 200512 TAGATATTGGAAGTGTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGAT 200453 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTT-TTCCCTAATGCGTTC 118300 || ||||||||||| || | | | || | | ||| | || | ||| || Sbjct 200452 GCCGTGGGCATGGGAGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTT-TTG 200394 Query 118301 CTTGAGAGCGTCCCAGTCGTAGT------TGAGCTTTGTCTCCCCCTGCCACATATCAAA 118354 ||| | | ||||||||| | || ||||| | |||| | | |||||| Sbjct 200393 CTTTAATGTGTCCCAGTCCCACAACTCACTGGGCTTTCTGTCCC------AAAGATCAAA 200340 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| | | ||| | ||| ||||| || ||||| | | || || | ||||| |||| Sbjct 200339 CTGTAACAAACCCTTGGAGGCTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTG 200280 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 |||||||||| || || || | || |||| ||||| ||||| ||||| || ||| Sbjct 200279 CGCCAATTCGATACTGGCTTCCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATT 200220 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || | | | || | | || ||||| | | || | ||||| |||| || | Sbjct 200219 CAATTCTCTAGCTTGTTGCGAGTCAAAGGGCAATCTCAATGCCATAAAAGCATCTGCCAA 200160 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTCCGAGCGGTCTCCA 118593 ||| || ||||| | ||||||| | || ||||| ||||| ||| | || ||| | Sbjct 200159 ACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTG-GCT-TCTGGA 200102 Query 118594 -CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 |||| ||||| || | ||| || | || || | || ||| |||||||| || | | Sbjct 200101 ACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACT 200042 Query 118653 TCATGAAGCTTTTC------GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 118706 ||||||||||| || ||| || || | |||| | ||| || ||| Sbjct 200041 TCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGA 199982 Query 118707 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 118766 || ||||| || |||| ||||| |||| |||||| | ||| || | |||| Sbjct 199981 AGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATT 199922 Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 || ||||| || ||| || ||| ||||||||||||||||| | ||| | || Sbjct 199921 TCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTG 199862 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || ||||| ||||| | |||| |||| || || || || ||||| | || | ||| || Sbjct 199861 CATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCG 199802 Query 118887 TTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTC---CTCGTACTTT 118943 | ||| | | ||| | ||| || || | | ||| |||||||| Sbjct 199801 TACCATAATTTCTGAGCCTTGATAGT---CTTTCTTCCACGGTTTTCACGTTCGTACTTC 199745 Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 ||| | || |||||||| ||||| | || || | ||| | |||| || || Sbjct 199744 TCGTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGA 199685 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 |||| | | ||| | | || || |||||| | |||||| || | ||| || ||||| Sbjct 199684 GAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCAC 199625 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 | || | ||| | ||| | | |||||| | || ||||| | | || Sbjct 199624 AATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCG 199565 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCC 119177 | || || | ||||||||||||||| ||||||| || | || | || || | | Sbjct 199564 ATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTC 199505 Query 119178 TTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGA 119237 || | |||| |||| | || || | |||||| || || || | || ||| ||| Sbjct 199504 TT---ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGA 199448 Query 119238 ATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCG 119297 |||||||||| || || || || || ||| | | | | | | | | Sbjct 199447 ATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTG 199388 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || ||||| | ||||||||| || || | ||| || || || || | | | | Sbjct 199387 TGTATGTGTAAACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTA 199328 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 | || || || || || || ||| | || | || || | ||||| ||||||||| Sbjct 199327 TCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGA 199268 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 119477 || ||||||||||||| || || | ||| || | ||||| | || | |||||| Sbjct 199267 GGGTTGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGAC 199208 Query 119478 ATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 119537 ||| | | ||| || || | ||| ||||||||| || || |||||||| || | || Sbjct 199207 ATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACT 199148 Query 119538 CGCATAAACATGTATTGGGGTGTTTC 119563 | ||||| | || || ||| |||| Sbjct 199147 CTCATAATTAAGTGCTGAGGTCTTTC 199122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435045391200