Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 259 6e-64 >seq1 Length=2974285 Score = 259 bits (286), Expect = 6e-64 Identities = 904/1400 (65%), Gaps = 27/1400 (2%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| || ||| || | | ||| | || ||||| ||||||||||| || |||||| Sbjct 199122 GAAAGACCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTCCC 199181 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 104335 ||| | || || ||| | | ||||||||| | || | |||| | || || Sbjct 199182 AGAGTCATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTACT 199241 Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395 | || |||||||||||||| | || ||||||||| ||||| | || || | || Sbjct 199242 TTGTTTAATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGAAA 199301 Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455 || || || || ||||||| |||| || | | | ||||| || || ||| | Sbjct 199302 GATGATTCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGAGT 199361 Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515 ||||| |||||||| | ||||| || | | | | | | | ||| || Sbjct 199362 GCTGGAGGTATTGGTTTACACATACACAACATTCGCTCGACTGGTGCCTACATTGCTGGT 199421 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 || || ||| || ||||||| ||||| ||| || | || || || ||| || || Sbjct 199422 ACCAACGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTCGT 199481 Query 104576 TATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || |||| | ||| | || || | | || | ||| | || |||||| Sbjct 199482 TACGTGGATCAGGGTGGTAATAAGAGACCCGGTGCATTTGCCTTATATTTGGAACCATGG 199541 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 |||||||||||| | || ||| | || | | || || ||| | || || | || Sbjct 199542 CACGCGGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAATGAGG 199601 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 | ||| | ||| | || | |||||||| || | || ||||||||||||||| || Sbjct 199602 GCAAGAGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTGAGCAG 199661 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | | || | ||| | |||| | ||| | ||||||| ||| Sbjct 199662 AATGCTGAGTGGACCTTGTTCTCTCCTAATGAGGCCCAAGGTTTGTCCGATGTTTACGGT 199721 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || |||||||| || | ||| |||||||| ||| || | | ||| | Sbjct 199722 GATGAGTTTGAGGCATTGTACGAGAAGTACGAACGTGAAAACCGTGGAAGAAAGACTATC 199781 Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 ||| | | ||| | || ||| | || | |||||||| || ||||| |||| | Sbjct 199782 AAGGCTCAGAAATTATGGTACGCCATTTTGGAGGCGCAAACCGAAACCGGTACCCCATTC 199841 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||| | |||||||| || || || |||| | |||||||||||| |||||||| ||||| Sbjct 199842 ATGTTGTACAAAGATGCATGCAATAAAAAAACTAATCAAAAGAACTTGGGTGTCATCAAA 199901 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 ||||||| | ||| ||||| | |||| | ||||||| ||||| ||| Sbjct 199902 TCTTCCAATTTGTGTTGTGAAATTGTCGAATACTCCTCGCCAGATGAGGTTGCTGTATGT 199961 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTG---- 105107 ||| | ||||| ||||| || ||| || ||| || ||| | ||| || | || Sbjct 199962 AACTTGGCATCTATCGCACTTCCCTCGTTTGTTGAAAAAGACAGCAACAACTTGTGGTAC 200021 Query 105108 -ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | ||| || || || |||||||| || ||| ||| ||| | |||||| | ||| Sbjct 200022 AACTTTGAGAAGCTTCATGAAGTTACCAAGGTTGTTACCCGTAACTTGAACAGAATCATT 200081 Query 105167 GATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225 ||| | || |||||||||||| ||| || | |||||| ||||| | | ||||| Sbjct 200082 GATCGTAACTTTTACCCCGTTCCAGA-AGCCAAAAGATCTAACATGAGGAATAGACCAAT 200140 Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTG---TCGCCACGCATTTG 105281 || | ||||| |||||| | || |||| || || | ||| | || | |||| Sbjct 200141 TGCATTGGGTGTGCAGGGTTTGGCAGATGCTTTTATGGCATTGAGATTGC----CCTTTG 200196 Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341 | || | |||| | ||| | ||| | || || || |||||||| |||| || Sbjct 200197 ACTCGCAACAAGCTAGAGAATTGAATATTCAGATTTTCGAAACCATGTACCACGGTGCAG 200256 Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 | || || ||| || ||||| |||| || ||| | || |||| | ||||| |||| Sbjct 200257 TGGAAGCCAGTATCGAATTGGCGCAGGTCGAGGGTTCTTACGAAAGTTACGAGGGGTCTC 200316 Query 105402 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---AGCTTCAC 105457 |||| || |||||| || | || |||||| | ||||| | || ||| || | Sbjct 200317 CAGCCTC-CAAGGGTTTGTTACAGTTTGATCTTTGGGACAGAAAGCCCAGTGAGTT---G 200372 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | |||||||| | | ||| || | || | ||| || | || | | Sbjct 200373 TGGGACTGGGACACATTAAAGCAAAAATTGGCTAAGCATGGTATTAGAAATTCGTTATTG 200432 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | ||||| ||||| || || ||||| | ||||| |||||||| || || ||||||||| Sbjct 200433 GTTGCTCCCATGCCCACGGCATCCACTTCCCAAATATTGGGTAACAACGAGTGCTTTGAA 200492 Query 105578 CCCTACACGACGAACATCTA 105597 |||||||| | || ||||| Sbjct 200493 CCCTACACTTCCAATATCTA 200512 Score = 105 bits (116), Expect = 8e-18 Identities = 216/321 (67%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 9607 ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT 9666 ||| ||||| |||||||| || || | || || | || | ||| | ||||||||| Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338 Query 9667 CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726 | ||| |||| | | || ||||| | |||||||||||||||| |||| Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278 Query 9727 GATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786 |||| || | || ||||| || ||| | ||| ||||| || || || || Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218 Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846 ||||||||||||||||||||| | || | ||| | | || || || || ||| Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGAAACTGACAAAAATGGAACGCCAGCTTC 422158 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906 ||| ||| | ||| || | ||||||||| || ||||| || ||||| | | || Sbjct 422157 ACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAGC 422098 Query 9907 ACCTCGTGGAATCTTGGCGCC 9927 ||||| |||||||||||| || Sbjct 422097 ACCTCTTGGAATCTTGGCACC 422077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260654184800