Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 259 6e-64
>seq1
Length=2974285
Score = 259 bits (286), Expect = 6e-64
Identities = 904/1400 (65%), Gaps = 27/1400 (2%)
Strand=Plus/Plus
Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275
|||| || ||| || | | ||| | || ||||| ||||||||||| || ||||||
Sbjct 199122 GAAAGACCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTCCC 199181
Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACC 104335
||| | || || ||| | | ||||||||| | || | |||| | || ||
Sbjct 199182 AGAGTCATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTACT 199241
Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395
| || |||||||||||||| | || ||||||||| ||||| | || || | ||
Sbjct 199242 TTGTTTAATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGAAA 199301
Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455
|| || || || ||||||| |||| || | | | ||||| || || ||| |
Sbjct 199302 GATGATTCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGAGT 199361
Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515
||||| |||||||| | ||||| || | | | | | | | ||| ||
Sbjct 199362 GCTGGAGGTATTGGTTTACACATACACAACATTCGCTCGACTGGTGCCTACATTGCTGGT 199421
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| || ||| || ||||||| ||||| ||| || | || || || ||| || ||
Sbjct 199422 ACCAACGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTCGT 199481
Query 104576 TATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632
|| || |||| | ||| | || || | | || | ||| | || ||||||
Sbjct 199482 TACGTGGATCAGGGTGGTAATAAGAGACCCGGTGCATTTGCCTTATATTTGGAACCATGG 199541
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692
|||||||||||| | || ||| | || | | || || ||| | || || | ||
Sbjct 199542 CACGCGGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAATGAGG 199601
Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
| ||| | ||| | || | |||||||| || | || ||||||||||||||| ||
Sbjct 199602 GCAAGAGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTGAGCAG 199661
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
| || | ||| | | || | ||| | |||| | ||| | ||||||| |||
Sbjct 199662 AATGCTGAGTGGACCTTGTTCTCTCCTAATGAGGCCCAAGGTTTGTCCGATGTTTACGGT 199721
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872
|| |||||||| || | ||| |||||||| ||| || | | ||| |
Sbjct 199722 GATGAGTTTGAGGCATTGTACGAGAAGTACGAACGTGAAAACCGTGGAAGAAAGACTATC 199781
Query 104873 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932
||| | | ||| | || ||| | || | |||||||| || ||||| |||| |
Sbjct 199782 AAGGCTCAGAAATTATGGTACGCCATTTTGGAGGCGCAAACCGAAACCGGTACCCCATTC 199841
Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992
||| | |||||||| || || || |||| | |||||||||||| |||||||| |||||
Sbjct 199842 ATGTTGTACAAAGATGCATGCAATAAAAAAACTAATCAAAAGAACTTGGGTGTCATCAAA 199901
Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052
||||||| | ||| ||||| | |||| | ||||||| ||||| |||
Sbjct 199902 TCTTCCAATTTGTGTTGTGAAATTGTCGAATACTCCTCGCCAGATGAGGTTGCTGTATGT 199961
Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA-CAAAGACATTTG---- 105107
||| | ||||| ||||| || ||| || ||| || ||| | ||| || | ||
Sbjct 199962 AACTTGGCATCTATCGCACTTCCCTCGTTTGTTGAAAAAGACAGCAACAACTTGTGGTAC 200021
Query 105108 -ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
| | ||| || || || |||||||| || ||| ||| ||| | |||||| | |||
Sbjct 200022 AACTTTGAGAAGCTTCATGAAGTTACCAAGGTTGTTACCCGTAACTTGAACAGAATCATT 200081
Query 105167 GATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAAT 105225
||| | || |||||||||||| ||| || | |||||| ||||| | | |||||
Sbjct 200082 GATCGTAACTTTTACCCCGTTCCAGA-AGCCAAAAGATCTAACATGAGGAATAGACCAAT 200140
Query 105226 TGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTG---TCGCCACGCATTTG 105281
|| | ||||| |||||| | || |||| || || | ||| | || | ||||
Sbjct 200141 TGCATTGGGTGTGCAGGGTTTGGCAGATGCTTTTATGGCATTGAGATTGC----CCTTTG 200196
Query 105282 ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTC 105341
| || | |||| | ||| | ||| | || || || |||||||| |||| ||
Sbjct 200197 ACTCGCAACAAGCTAGAGAATTGAATATTCAGATTTTCGAAACCATGTACCACGGTGCAG 200256
Query 105342 TTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401
| || || ||| || ||||| |||| || ||| | || |||| | ||||| ||||
Sbjct 200257 TGGAAGCCAGTATCGAATTGGCGCAGGTCGAGGGTTCTTACGAAAGTTACGAGGGGTCTC 200316
Query 105402 CAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCA---AGCTTCAC 105457
|||| || |||||| || | || |||||| | ||||| | || ||| || |
Sbjct 200317 CAGCCTC-CAAGGGTTTGTTACAGTTTGATCTTTGGGACAGAAAGCCCAGTGAGTT---G 200372
Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517
| |||||||| | | ||| || | || | ||| || | || | |
Sbjct 200373 TGGGACTGGGACACATTAAAGCAAAAATTGGCTAAGCATGGTATTAGAAATTCGTTATTG 200432
Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577
| ||||| ||||| || || ||||| | ||||| |||||||| || || |||||||||
Sbjct 200433 GTTGCTCCCATGCCCACGGCATCCACTTCCCAAATATTGGGTAACAACGAGTGCTTTGAA 200492
Query 105578 CCCTACACGACGAACATCTA 105597
|||||||| | || |||||
Sbjct 200493 CCCTACACTTCCAATATCTA 200512
Score = 105 bits (116), Expect = 8e-18
Identities = 216/321 (67%), Gaps = 0/321 (0%)
Strand=Plus/Minus
Query 9607 ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT 9666
||| ||||| |||||||| || || | || || | || | ||| | |||||||||
Sbjct 422397 ATTGTCAAAGCCATCCATTTCAACTAACAACTGATTCAATGTGTTTTCTCTTTCATCATT 422338
Query 9667 CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9726
| ||| |||| | | || ||||| | |||||||||||||||| ||||
Sbjct 422337 GCCACCCATTTTACCATTTCCTCTTTCTTTTCCTATAGCATCAATCTCATCAACAAAGAT 422278
Query 9727 GATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCAC 9786
|||| || | || ||||| || ||| | ||| ||||| || || || ||
Sbjct 422277 GATGGCAGGAGCCATATCACGAGCAGTTTTAAACAAATCGCGTACTCGAGATGCTCCAAC 422218
Query 9787 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9846
||||||||||||||||||||| | || | ||| | | || || || || |||
Sbjct 422217 ACCAACAAACATCTCCACAAATTCTGATCCCGAAACTGACAAAAATGGAACGCCAGCTTC 422158
Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9906
||| ||| | ||| || | ||||||||| || ||||| || ||||| | | ||
Sbjct 422157 ACCTGCAGTTGCTTTCGCTAAAAGAGTCTTTCCTGTACCAGGAGGACCCGATAAAATAGC 422098
Query 9907 ACCTCGTGGAATCTTGGCGCC 9927
||||| |||||||||||| ||
Sbjct 422097 ACCTCTTGGAATCTTGGCACC 422077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260654184800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |