Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 7e-18
>seq1
Length=2974285
Score = 105 bits (116), Expect = 7e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678
|||||| | |||| |||||||||||||||| | ||||| ||| || || ||||| |
Sbjct 200665 TCAAGGCGTTGTACAAGACCGTATGGGAAATCTCTCAGAAACACATTATTGATATGGCTG 200724
Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738
| || || | ||||| ||| || || |||||||| | || || ||| || |||| |
Sbjct 200725 CAGACCGTGCCGCCTTCATTGATCAATCCCAGTCTTTGAACATCCACATCAAGGATCCTA 200784
Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798
||| || | | ||| |||||| | ||||| ||| | ||||| ||||| || || |
Sbjct 200785 CAATGGGTAAATTAACCTCGATGCATTTTTACGGTTGGAAGAAGGGACTCAAAACAGGTA 200844
Query 20799 TGTACTATCTGCGGACCC 20816
||||||| || | ||||
Sbjct 200845 TGTACTACTTGAGAACCC 200862
Score = 96.9 bits (106), Expect = 4e-15
Identities = 344/535 (64%), Gaps = 2/535 (0%)
Strand=Plus/Plus
Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162
|||||| || | | ||| |||| || | || || ||||| |||||| | || |||||
Sbjct 199128 CCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTCCCAGAGTC 199187
Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222
|| || ||| | ||||| ||||| ||| || |||| |||| || | ||
Sbjct 199188 ATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTACTTTGTTT 199247
Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282
|| || ||||| |||||| || ||||| || || | | |||||||| |||||
Sbjct 199248 AATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGAAAGATGAT 199307
Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342
||||| || || || || || | ||| || || || |||||| | | ||
Sbjct 199308 TCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGAGTGCTGGA 199367
Query 19343 GGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401
||||| || | ||| | | | || || || |||| |||| | || ||| || ||
Sbjct 199368 GGTATTGGTTTACACATACAC-AACATTCGCTCGACTGGTGCCTACATTGCTGGTACCAA 199426
Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461
||| | | |||||| | || ||| | | || ||||| ||||| || | |||||
Sbjct 199427 CGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTCGTTACGT 199486
Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521
| ||||| || || | || | || ||| | || | || |||||||||||
Sbjct 199487 GGATCAGGGTGGTAATAAGAGACCCGGTGCATTTGCCTTATATTTGGAACCATGGCACGC 199546
Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCG 19581
||| || | |||||| |||| | | ||| || ||| | || || ||| | |
Sbjct 199547 GGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAATGAGGGCAAG 199606
Query 19582 CGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636
|| | ||| | || ||||||||||| ||| | || ||| ||| |||||| ||
Sbjct 199607 AGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTGAGCAG 199661
Score = 87.8 bits (96), Expect = 2e-12
Identities = 202/294 (69%), Gaps = 9/294 (3%)
Strand=Plus/Plus
Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA- 59883
||||||||| ||||| ||||| | ||||||| | | ||||||| || | |||
Sbjct 232716 TATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGC 232775
Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGG 59942
|| || | | ||| ||| || ||||| | || ||| | ||| | || || || |||
Sbjct 232776 AGACTTTT-TATTCAATGCTATTGAGACTATTCCTTGCA-TCAAAAAGAAGGCTGACTGG 232833
Query 59943 GCCATGCAGTGGATGAGTCCTG--GAG-CATCATTTGCACAACGTCTCATAGCTTTTGCA 59999
|| | | ||||| ||| || ||| | | ||||| ||||||| | || |||||
Sbjct 232834 GCTTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGC- 232892
Query 60000 TGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCG 60058
||| || ||||| || |||||| ||| ||||| | || || ||| | || ||| |
Sbjct 232893 TGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAG 232952
Query 60059 TGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112
||| | ||||| || ||| ||||||||||||| | || | ||| || |||||
Sbjct 232953 AGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGG 233006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548524662868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |