Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 >seq1 Length=2974285 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20619 TCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGG 20678 |||||| | |||| |||||||||||||||| | ||||| ||| || || ||||| | Sbjct 200665 TCAAGGCGTTGTACAAGACCGTATGGGAAATCTCTCAGAAACACATTATTGATATGGCTG 200724 Query 20679 CCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGA 20738 | || || | ||||| ||| || || |||||||| | || || ||| || |||| | Sbjct 200725 CAGACCGTGCCGCCTTCATTGATCAATCCCAGTCTTTGAACATCCACATCAAGGATCCTA 200784 Query 20739 GCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCA 20798 ||| || | | ||| |||||| | ||||| ||| | ||||| ||||| || || | Sbjct 200785 CAATGGGTAAATTAACCTCGATGCATTTTTACGGTTGGAAGAAGGGACTCAAAACAGGTA 200844 Query 20799 TGTACTATCTGCGGACCC 20816 ||||||| || | |||| Sbjct 200845 TGTACTACTTGAGAACCC 200862 Score = 96.9 bits (106), Expect = 4e-15 Identities = 344/535 (64%), Gaps = 2/535 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | | ||| |||| || | || || ||||| |||||| | || ||||| Sbjct 199128 CCTCAGCACTTAATTATGAGAGTTGCCATTGGTATTCATGGTGACGACATTCCCAGAGTC 199187 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 || || ||| | ||||| ||||| ||| || |||| |||| || | || Sbjct 199188 ATTGAAACTTACAATATGATGTCCCAGAGACACTTTACCCACGGCTCGCCTACTTTGTTT 199247 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 || || ||||| |||||| || ||||| || || | | |||||||| ||||| Sbjct 199248 AATGCTGGTACACCCAACCCTCAAATGTCCTCGTGCTTTTTGATTGCTATGAAAGATGAT 199307 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 ||||| || || || || || | ||| || || || |||||| | | || Sbjct 199308 TCTATTGACGGTATTTATGATACCTTGAAGACATGTGCCTTGATTTCCAAGAGTGCTGGA 199367 Query 19343 GGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 ||||| || | ||| | | | || || || |||| |||| | || ||| || || Sbjct 199368 GGTATTGGTTTACACATACAC-AACATTCGCTCGACTGGTGCCTACATTGCTGGTACCAA 199426 Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 ||| | | |||||| | || ||| | | || ||||| ||||| || | ||||| Sbjct 199427 CGGTACCTCTAATGGTATCATTCCTATGGTTAGAGTTTTCAATAACACTGCTCGTTACGT 199486 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 | ||||| || || | || | || ||| | || | || ||||||||||| Sbjct 199487 GGATCAGGGTGGTAATAAGAGACCCGGTGCATTTGCCTTATATTTGGAACCATGGCACGC 199546 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCG 19581 ||| || | |||||| |||| | | ||| || ||| | || || ||| | | Sbjct 199547 GGATATCTTTGATTTCATCGATATTAGAAAGAATCATGGTAAGGAAGAAATGAGGGCAAG 199606 Query 19582 CGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 || | ||| | || ||||||||||| ||| | || ||| ||| |||||| || Sbjct 199607 AGATTTGTTCCCAGCATTGTGGATTCCTGACTTGTTTATGAAGAGAGTTGAGCAG 199661 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/294 (69%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 59825 TATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA- 59883 ||||||||| ||||| ||||| | ||||||| | | ||||||| || | ||| Sbjct 232716 TATCCACTCAGAGACCTACTCCTTGTTGATCGACACCTATATCAAGGACCCCAAGGAGGC 232775 Query 59884 AGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGG 59942 || || | | ||| ||| || ||||| | || ||| | ||| | || || || ||| Sbjct 232776 AGACTTTT-TATTCAATGCTATTGAGACTATTCCTTGCA-TCAAAAAGAAGGCTGACTGG 232833 Query 59943 GCCATGCAGTGGATGAGTCCTG--GAG-CATCATTTGCACAACGTCTCATAGCTTTTGCA 59999 || | | ||||| ||| || ||| | | ||||| ||||||| | || ||||| Sbjct 232834 GCTTTACGCTGGATCAGTGATGACGAGGCCTTATTTGGCGAACGTCTTGTTGCATTTGC- 232892 Query 60000 TGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCG 60058 ||| || ||||| || |||||| ||| ||||| | || || ||| | || ||| | Sbjct 232893 TGCTGTTGAAGGTATTTTCTTCAGTGGATCGTTTGCATCCATCTTTTGGTTGAAGAAGAG 232952 Query 60059 TGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 ||| | ||||| || ||| ||||||||||||| | || | ||| || ||||| Sbjct 232953 AGGCTTGATGCCTGGTTTGACTTTCTCCAACGAGTTAATCTGCCGTGATGAGGG 233006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524662868800