Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1 172 6e-38
seq7 165 9e-36
>seq1
Length=2974285
Score = 172 bits (190), Expect = 6e-38
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | || || || |||||||| ||||||||||| || |
Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || ||||||||||||||||| ||||| |||||||||
Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | ||||| |||||||||||| | || |||| | || || ||||||| |||
Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| |||||||| || || |||||||| || |||
Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTG 1360605
Score = 170 bits (188), Expect = 2e-37
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | || || || |||||||| ||||||||||| || |
Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || ||||||||||||||||| ||||| |||||||||
Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | ||||| |||||||||||| | || |||| | || || ||||||| |||
Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| || ||||| || || |||||||| || |||
Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1360833
Score = 170 bits (188), Expect = 2e-37
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||||||||| | || || || |||||||| ||||||||||| || |
Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| | || ||||||||||||||||| ||||| |||||||||
Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | ||||| |||||||||||| | || |||| | || || ||||||| |||
Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| || ||||| || || |||||||| || |||
Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1361061
Score = 165 bits (182), Expect = 9e-36
Identities = 165/214 (77%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| ||||| | || || || |||||||| ||||||||||| ||
Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| || | ||| | || ||||||||||||||||| ||||| ||||||||
Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | ||||| |||||||||||| | || |||| | || || ||||||| ||
Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| | || ||||| || || |||||||| || |||
Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1361289
Score = 158 bits (174), Expect = 1e-33
Identities = 670/1051 (64%), Gaps = 37/1051 (4%)
Strand=Plus/Minus
Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784
|| |||| ||||| || || | || || || | | | | |||| |||| | |||
Sbjct 200167 TCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTGGCT 200108
Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844
|| |||| |||||||||||| ||| |||| | ||||| ||| || |||||||||
Sbjct 200107 TCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTG 200048
Query 80845 GTAACATCATGAAGTTTCTGAAAGTCG------AATTGGTTCC--CCTT----CACAAAT 80892
||||| |||||||| |||| ||||| | || | ||| | ||| |||||
Sbjct 200047 GTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAAC 199988
Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952
| ||||| | || |||| || || || || ||||| || | | | |||
Sbjct 199987 GAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCG 199928
Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012
|| ||||| |||||||| ||||| || || ||||| ||| || || || | ||
Sbjct 199927 ACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTT 199868
Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072
||||| || || ||||| ||||| | ||||||||||| ||| || | || |
Sbjct 199867 TTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAA 199808
Query 81073 ATGGCGTCCCA-AATCTCGCGCGCCTTGACCACCTT------GCGGAATTTGCCTTCGGC 81125
||||||| ||| ||| || | ||||||| ||| ||| || | ||||
Sbjct 199807 ATGGCGTACCATAATTTC-TGAGCCTTGATAGTCTTTCTTCCACGGTTTTCACGTTCG-- 199751
Query 81126 CACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185
||||| |||| | | || |||| |||||| || || | | || ||
Sbjct 199750 ----TACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGC 199695
Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245
||| ||||| | | || | ||| || | | | ||| || |||||| || |||
Sbjct 199694 CTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTC 199635
Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305
||| ||||| | || | ||||| || | | | || || | ||| || ||
Sbjct 199634 AGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTT 199575
Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCG 81364
| | |||| || || | ||| ||||| |||||||| |||| ||| | ||| ||
Sbjct 199574 TCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGC 199515
Query 81365 AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419
|| | ||| | |||||||| | |||||||| ||||| || || || |
Sbjct 199514 ACCGGGTCTCTT---ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCT 199458
Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479
| |||||| |||||||||| || |||||| ||||| | || | || | |
Sbjct 199457 AACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGA 199398
Query 81480 GCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACC 81538
||| | ||| || || || ||| || || || | | ||| |||||| |||||
Sbjct 199397 GCGAATGTTGTGTATGTGTAA-ACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATG 199339
Query 81539 GGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGC 81598
|||| ||| |||||||| || || || ||| | |||||| ||| ||| || ||
Sbjct 199338 TCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACG 199279
Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
||||| |||||| | || || ||||| |||| || || | |||| | || |
Sbjct 199278 AGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGT 199219
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| | ||||||| | || ||||| |||| | ||||| |||||||| |||||||
Sbjct 199218 GTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATAC 199159
Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749
| || || || | ||||| | || ||| ||
Sbjct 199158 CAATGGCAACTCTCATAATTAAGTGCTGAGG 199128
Score = 100 bits (110), Expect = 3e-16
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106
|||||||| || || ||||| ||||||||||| ||||| | ||||| || | | ||
Sbjct 200851 TAGTACATACCTGTTTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTA 200792
Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166
| | ||| || | || ||| |||||||| |||||| || ||| ||||| || ||
Sbjct 200791 CCCATTGTAGGATCCTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCA 200732
Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| ||||| ||||| |||||||| || || | ||||||||||| ||
Sbjct 200731 CGGTCTGCAGCCATATCAATAATGTGTTTCTGAGAGATTTCCCATACGGT 200682
>seq7
Length=860703
Score = 165 bits (182), Expect = 9e-36
Identities = 160/206 (78%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| |||||||| || |||||||| | ||||| |||||||| || |||||||| |||||
Sbjct 37630 ATCATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCT 37689
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||||| ||| | ||| | || |||||||||||||| || ||||| || |||
Sbjct 37690 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGAC 37749
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| | | |||||||||||||||||| | ||||| | ||||| || | |||||
Sbjct 37750 CAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTAC 37809
Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608
|| |||||||||| || ||||||||
Sbjct 37810 AACATCCAAAAGGAGTCTACTCTTCA 37835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310257422400
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