Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 172 6e-38 seq7 165 9e-36 >seq1 Length=2974285 Score = 172 bits (190), Expect = 6e-38 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || || |||||||| ||||||||||| || | Sbjct 1360817 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360758 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| ||||| ||||||||| Sbjct 1360757 GACACTATTGACAAMGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360698 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||||||| | || |||| | || || ||||||| ||| Sbjct 1360697 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGAAGAACGTTATCAGACTACAAT 1360638 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | |||||||| || || |||||||| || ||| Sbjct 1360637 ATTCAAAAGGAGTCTACGCTTCATCTTGTATTG 1360605 Score = 170 bits (188), Expect = 2e-37 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || || |||||||| ||||||||||| || | Sbjct 1361045 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1360986 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| ||||| ||||||||| Sbjct 1360985 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1360926 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||||||| | || |||| | || || ||||||| ||| Sbjct 1360925 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1360866 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || ||||| || || |||||||| || ||| Sbjct 1360865 ATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1360833 Score = 170 bits (188), Expect = 2e-37 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || || |||||||| ||||||||||| || | Sbjct 1361273 ATGCAAATCTTTGTCAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTCT 1361214 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || ||||||||||||||||| ||||| ||||||||| Sbjct 1361213 GACACTATTGACAAYGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCAG 1361154 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| |||||||||||| | || |||| | || || ||||||| ||| Sbjct 1361153 CAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAAT 1361094 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || ||||| || || |||||||| || ||| Sbjct 1361093 ATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1361061 Score = 165 bits (182), Expect = 9e-36 Identities = 165/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || || || |||||||| ||||||||||| || Sbjct 1361502 AATGCAAATCTTTGTAAAGACCTTGACTGGAAAAACTATTACCCTTGAGGTTGAATCCTC 1361443 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| || | ||| | || ||||||||||||||||| ||||| |||||||| Sbjct 1361442 TGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCACCAGACCA 1361383 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | ||||| |||||||||||| | || |||| | || || ||||||| || Sbjct 1361382 GCAGAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGCAGAACGTTATCAGACTACAA 1361323 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | || ||||| || || |||||||| || ||| Sbjct 1361322 TATTCAGAAGGAGTCTACACTTCATCTTGTATTG 1361289 Score = 158 bits (174), Expect = 1e-33 Identities = 670/1051 (64%), Gaps = 37/1051 (4%) Strand=Plus/Minus Query 80725 TCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCC 80784 || |||| ||||| || || | || || || | | | | |||| |||| | ||| Sbjct 200167 TCTGCCAAACCCTGCACACCCAATGCAATTGGTCTATTCCTCATGTTAGATCTTTTGGCT 200108 Query 80785 TCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT 80844 || |||| |||||||||||| ||| |||| | ||||| ||| || ||||||||| Sbjct 200107 TCTGGAACGGGGTAAAAGTTACGATCAATGATTCTGTTCAAGTTACGGGTAACAACCTTG 200048 Query 80845 GTAACATCATGAAGTTTCTGAAAGTCG------AATTGGTTCC--CCTT----CACAAAT 80892 ||||| |||||||| |||| ||||| | || | ||| | ||| ||||| Sbjct 200047 GTAACTTCATGAAGCTTCTCAAAGTTGTACCACAAGTTGTTGCTGTCTTTTTCAACAAAC 199988 Query 80893 GCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCG 80952 | ||||| | || |||| || || || || ||||| || | | | ||| Sbjct 199987 GAGGGAAGTGCGATAGATGCCAAGTTACATACAGCAACCTCATCTGGCGAGGAGTATTCG 199928 Query 80953 ACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTG 81012 || ||||| |||||||| ||||| || || ||||| ||| || || || | || Sbjct 199927 ACAATTTCACAACACAAATTGGAAGATTTGATGACACCCAAGTTCTTTTGATTAGTTTTT 199868 Query 81013 GCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGG 81072 ||||| || || ||||| ||||| | ||||||||||| ||| || | || | Sbjct 199867 TTATTGCATGCATCTTTGTACAACATGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAA 199808 Query 81073 ATGGCGTCCCA-AATCTCGCGCGCCTTGACCACCTT------GCGGAATTTGCCTTCGGC 81125 ||||||| ||| ||| || | ||||||| ||| ||| || | |||| Sbjct 199807 ATGGCGTACCATAATTTC-TGAGCCTTGATAGTCTTTCTTCCACGGTTTTCACGTTCG-- 199751 Query 81126 CACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185 ||||| |||| | | || |||| |||||| || || | | || || Sbjct 199750 ----TACTTCTCGTACAATGCCTCAAACTCATCACCGTAAACATCGGACAAACCTTGGGC 199695 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 ||| ||||| | | || | ||| || | | | ||| || |||||| || ||| Sbjct 199694 CTCATTAGGAGAGAACAAGGTCCACTCAGCATTCTGCTCAACTCTCTTCATAAACAAGTC 199635 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305 ||| ||||| | || | ||||| || | | | || || | ||| || || Sbjct 199634 AGGAATCCACAATGCTGGGAACAAATCTCTTGCCCTCATTTCTTCCTTACCATGATTCTT 199575 Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGC-GATCG 81364 | | |||| || || | ||| ||||| |||||||| |||| ||| | ||| || Sbjct 199574 TCTAATATCGATGAAATCAAAGATATCCGCGTGCCATGGTTCCAAATATAAGGCAAATGC 199515 Query 81365 AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACG 81419 || | ||| | |||||||| | |||||||| ||||| || || || | Sbjct 199514 ACCGGGTCTCTT---ATTACCACCCTGATCCACGTAACGAGCAGTGTTATTGAAAACTCT 199458 Query 81420 CAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGC 81479 | |||||| |||||||||| || |||||| ||||| | || | || | | Sbjct 199457 AACCATAGGAATGATACCATTAGAGGTACCGTTGGTACCAGCAATGTAGGCACCAGTCGA 199398 Query 81480 GCGCACCTTGCTGAT-TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACC 81538 ||| | ||| || || || ||| || || || | | ||| |||||| ||||| Sbjct 199397 GCGAATGTTGTGTATGTGTAA-ACCAATACCTCCAGCACTCTTGGAAATCAAGGCACATG 199339 Query 81539 GGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGC 81598 |||| ||| |||||||| || || || ||| | |||||| ||| ||| || || Sbjct 199338 TCTTCAAGGTATCATAAATACCGTCAATAGAATCATCTTTCATAGCAATCAAAAAGCACG 199279 Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 ||||| |||||| | || || ||||| |||| || || | |||| | || | Sbjct 199278 AGGACATTTGAGGGTTGGGTGTACCAGCATTAAACAAAGTAGGCGAGCCGTGGGTAAAGT 199219 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | | ||||||| | || ||||| |||| | ||||| |||||||| ||||||| Sbjct 199218 GTCTCTGGGACATCATATTGTAAGTTTCAATGACTCTGGGAATGTCGTCACCATGAATAC 199159 Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749 | || || || | ||||| | || ||| || Sbjct 199158 CAATGGCAACTCTCATAATTAAGTGCTGAGG 199128 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTC 80106 |||||||| || || ||||| ||||||||||| ||||| | ||||| || | | || Sbjct 200851 TAGTACATACCTGTTTTGAGTCCCTTCTTCCAACCGTAAAAATGCATCGAGGTTAATTTA 200792 Query 80107 GCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCA 80166 | | ||| || | || ||| |||||||| |||||| || ||| ||||| || || Sbjct 200791 CCCATTGTAGGATCCTTGATGTGGATGTTCAAAGACTGGGATTGATCAATGAAGGCGGCA 200732 Query 80167 CGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || ||||| ||||| |||||||| || || | ||||||||||| || Sbjct 200731 CGGTCTGCAGCCATATCAATAATGTGTTTCTGAGAGATTTCCCATACGGT 200682 >seq7 Length=860703 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || |||||||| || |||||||| | ||||| |||||||| || |||||||| ||||| Sbjct 37630 ATCATGCAAATTTTCGTCAAGACCTTAACCGGTAAGACTATCACCCTTGAGGTGGAGTCT 37689 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| ||| | ||| | || |||||||||||||| || ||||| || ||| Sbjct 37690 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGAC 37749 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| | | |||||||||||||||||| | ||||| | ||||| || | ||||| Sbjct 37750 CAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAGGACGGCCGTACTCTTTCTGACTAC 37809 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 || |||||||||| || |||||||| Sbjct 37810 AACATCCAAAAGGAGTCTACTCTTCA 37835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310257422400