Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq7 125 2e-23 >seq1 Length=2974285 Score = 127 bits (140), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| ||||| || || || || | | || ||||||||||| Sbjct 1360609 ACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATCTTCT 1360668 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | | || ||||| || |||| || ||||||||||| Sbjct 1360669 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360728 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || || ||||||||| ||||||||| || || || || ||| Sbjct 1360729 ATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1360788 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | ||||| Sbjct 1360789 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| || || || || || || | | || || |||||||| Sbjct 1361293 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361352 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | | || ||||| || |||| || ||||||||||| Sbjct 1361353 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361412 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || ||||| || || ||||||||| ||||||||| || || || || ||| Sbjct 1361413 ATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361472 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || | ||||||||||| | |||||| Sbjct 1361473 CCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 Score = 118 bits (130), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| || || || || || || | | || || |||||||| Sbjct 1360837 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1360896 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | | || ||||| || |||| || ||||||||||| Sbjct 1360897 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360956 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || || ||||||||| ||||||||| || || || || ||| Sbjct 1360957 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361016 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | ||||| Sbjct 1361017 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 118 bits (130), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| ||||| || ||||| || || || || || || | | || || |||||||| Sbjct 1361065 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361124 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | | || ||||| || |||| || ||||||||||| Sbjct 1361125 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361184 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || || || || ||||||||| ||||||||| || || || || ||| Sbjct 1361185 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361244 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||||| ||||| | ||||| Sbjct 1361245 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 >seq7 Length=860703 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| ||||| ||||||||||| || || | ||| || | || || |||| || Sbjct 37836 GTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTG 37777 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || || || || | | ||| |||||||| |||| |||||||||||||| ||||| Sbjct 37776 CTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTT 37717 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || || || |||||||| || || ||||| || ||||| ||||| || || Sbjct 37716 GGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGT 37657 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 37656 TAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151702967300