Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 5e-24
seq7 125 2e-23
>seq1
Length=2974285
Score = 127 bits (140), Expect = 5e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
||||| ||||| || ||||| ||||| || || || || | | || |||||||||||
Sbjct 1360609 ACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATCTTCT 1360668
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
| ||||| || ||||| || | | || ||||| || |||| || |||||||||||
Sbjct 1360669 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360728
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || || || || || ||||||||| ||||||||| || || || || |||
Sbjct 1360729 ATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1360788
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || | ||||| ||||| | |||||
Sbjct 1360789 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
||||| ||||| || ||||| || || || || || || | | || || ||||||||
Sbjct 1361293 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361352
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
| ||||| || ||||| || | | || ||||| || |||| || |||||||||||
Sbjct 1361353 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361412
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || ||||| || || ||||||||| ||||||||| || || || || |||
Sbjct 1361413 ATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361472
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || | ||||||||||| | ||||||
Sbjct 1361473 CCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502
Score = 118 bits (130), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
||||| ||||| || ||||| || || || || || || | | || || ||||||||
Sbjct 1360837 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1360896
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
| ||||| || ||||| || | | || ||||| || |||| || |||||||||||
Sbjct 1360897 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360956
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || || || || || ||||||||| ||||||||| || || || || |||
Sbjct 1360957 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361016
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || | ||||| ||||| | |||||
Sbjct 1361017 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 118 bits (130), Expect = 2e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
||||| ||||| || ||||| || || || || || || | | || || ||||||||
Sbjct 1361065 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361124
Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025
| ||||| || ||||| || | | || ||||| || |||| || |||||||||||
Sbjct 1361125 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361184
Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085
||||| || || || || || ||||||||| ||||||||| || || || || |||
Sbjct 1361185 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361244
Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || | ||||| ||||| | |||||
Sbjct 1361245 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
>seq7
Length=860703
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970
||||||||| ||||| ||||||||||| || || | ||| || | || || |||| ||
Sbjct 37836 GTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTG 37777
Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
||| || || || || | | ||| |||||||| |||| |||||||||||||| |||||
Sbjct 37776 CTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTT 37717
Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090
|| || || || |||||||| || || ||||| || ||||| ||||| || ||
Sbjct 37716 GGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGT 37657
Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114
| ||||| || || | |||||
Sbjct 37656 TAAGGTCTTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151702967300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |