Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 260 1e-64 >seq1 Length=2974285 Score = 260 bits (288), Expect = 1e-64 Identities = 580/868 (67%), Gaps = 17/868 (2%) Strand=Plus/Minus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 ||||||| |||||||| || |||| ||||||||| || || || || ||| | || Sbjct 233328 AACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGCCAA 233269 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 |||||| ||||||||||| ||||| |||||||| | |||||| ||||| || Sbjct 233268 CGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCCTAA 233209 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 || ||||| |||| ||| || ||||| || | ||||||| ||| | || ||||| || Sbjct 233208 TGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTTCAT 233149 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 || | || | ||| | || | || |||||||| | ||| |||| ||||| || Sbjct 233148 ACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGCCTC 233089 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAA 4546 |||||| || | | | || | | ||| | ||| |||| || || || Sbjct 233088 TGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAACAA 233029 Query 4547 ACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAA 4606 || |||||||| |||||||| || || | || || | ||||| || || || || Sbjct 233028 GCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGTCAA 232969 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| || |||||||| || | |||||| || | ||||| || ||| ||||| Sbjct 232968 ACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAAGAA 232909 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| || || ||||| || || | || || || || || | ||| | Sbjct 232908 AATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAG---GCCTCGTCATC 232852 Query 4727 A---ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||| ||| ||||||| ||| || || || | ||| ||||| || | ||||| Sbjct 232851 ACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGC 232792 Query 4784 GTTAAATAA----TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGC 4839 || ||||| | | | | || ||||| | ||||| ||||| || | | | Sbjct 232791 ATTGAATAAAAAGTCTGCCTCCTTG----GGGTCCTTGATATAGGTGTCGATCAACAAGG 232736 Query 4840 TATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTT 4899 || | || || || |||||||| || || || || |||||||||||| | |||| Sbjct 232735 AGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTT 232676 Query 4900 CTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC 4959 ||| | ||||| ||| | | || | || || ||||| ||||| || ||||| || Sbjct 232675 CTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGG 232616 Query 4960 TGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAA---GTT 5016 || || ||||| ||||||| | | || || ||| | | |||| || | | | Sbjct 232615 AAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGAT 232556 Query 5017 TTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTT 5076 | ||||||| | ||||| ||||| | ||| || |||||||||| || |||| Sbjct 232555 TGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTT 232496 Query 5077 CCGCTTTTTTGTACATAGACCAAATATC 5104 | ||||| |||||||| |||||| || Sbjct 232495 CTGCTTTCTTGTACATTTGCCAAATCTC 232468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049495906660