Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 336 3e-87
seq5 201 2e-46
>seq1
Length=2974285
Score = 336 bits (372), Expect = 3e-87
Identities = 1253/1937 (65%), Gaps = 48/1937 (2%)
Strand=Plus/Minus
Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 77170
|| ||| || || ||||| ||||| |||| ||||||||| | | ||| ||||| ||
Sbjct 200558 ATAAGGGTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGT 200499
Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230
|| ||||| | | || ||||| ||||| ||||| | ||| || || || ||||| ||
Sbjct 200498 GTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGG 200439
Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 77290
|| |||||||| |||||| | |||||| | | ||| | |||| || | |||
Sbjct 200438 AGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTA-ATGTGTCCC 200380
Query 77291 A-TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG 77349
| ||||| | || || ||||||||||| | |||| | || || |
Sbjct 200379 AGTCCCACAACTCACTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGG 200320
Query 77350 CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTT 77409
| || || | || |||| |||| || || | || | ||| ||| ||||
Sbjct 200319 CTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTT 200260
Query 77410 CCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATAC 77469
||| ||| |||| || || ||||||||||||| |||| | ||| |||| | |
Sbjct 200259 CCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGT-TGC 200201
Query 77470 TA-TCAAACGGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527
| ||||| || ||| | || | ||||| |||||||| || ||||| || || | |
Sbjct 200200 GAGTCAAAGGGC-AATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGC 200142
Query 77528 AATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTC 77587
||| ||||||| ||| | || || |||| |||||||||| || ||| | ||| ||
Sbjct 200141 AATTGGTCTATTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATC 200082
Query 77588 TATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT- 77646
|| ||| | || | || | ||| || || || || | || || ||| |
Sbjct 200081 AATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTT 200022
Query 77647 ------CAAATCTT--CCATCTAT---AACAAACATGTTCAAAGCTATAGATGCTAGATT 77695
||| | | | ||| | ||||||| | | || |||||||| | ||
Sbjct 200021 GTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTT 199962
Query 77696 ACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754
||| || || ||||||| | ||| || |||| | || || ||| | ||| |
Sbjct 199961 ACATACAGCAACCTCATCTGGCGA-GGAGTATTCGACAATTTCACAACACAAATTGGAAG 199903
Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814
||||||| |||| || | ||| || | ||||||||||||| || || || | |
Sbjct 199902 ATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACA 199843
Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCT 77873
| || || || |||||||| | || | || | ||| | | ||| | ||| |||
Sbjct 199842 TGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATT-TCTGAGCC 199784
Query 77874 TTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATT 77931
|| || | | | || | || | ||| || | ||| | ||| ||||| |
Sbjct 199783 TTGATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCC--TCAAACT 199726
Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991
|||| || ||||||| ||| || || ||||| || | | ||| | ||| |||
Sbjct 199725 CATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAG 199666
Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051
||| | || ||||| |||||||| | ||||| ||||| | || || | |||||
Sbjct 199665 CATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTC 199606
Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111
| || |||||| || || ||||||| ||| ||||| || || | ||||| |
Sbjct 199605 TTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCG 199546
Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171
||||||||||| | ||||| || | | || |||| |||||||| |||||||| |
Sbjct 199545 CGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCA 199486
Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCAT 78231
|| | || |||||||| ||||||| | ||| ||||| ||||| ||||| || || |
Sbjct 199485 CGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGT 199426
Query 78232 TTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTC 78291
| || |||| ||| || ||| | | |||||| || ||| || || || ||||
Sbjct 199425 TGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTC 199366
Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351
| || |||| || || | || || ||||| ||||| || ||||| || ||| |
Sbjct 199365 CAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAAT 199306
Query 78352 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411
|||| |||| || | ||| || ||||||||| | | || || |||||||
Sbjct 199305 CATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAA 199246
Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG 78471
| || || || || | || ||||| | | | || | | |||||| |||||||
Sbjct 199245 ACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAA--- 199189
Query 78472 CTGATTCT----ATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527
||| ||| ||||| |||||| || | || || | ||| | | ||||||
Sbjct 199188 -TGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGA 199130
Query 78528 GGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 78587
|||||||| | || ||| ||| | || | ||| ||| | || |||||||| |||
Sbjct 199129 GGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAA 199070
Query 78588 CCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTG 78647
||||| || ||||| ||| || | || | | ||| |||| | | | ||| |
Sbjct 199069 CCAAAGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCG 199010
Query 78648 TATTTGGTAACAATATC-CATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT 78706
|| ||||||| ||| || ||| | || || ||||| || | | |||| ||||
Sbjct 199009 TACTTGGTAATAATGTCGTATGTTTCCTG-GGAGATCATAGGGGAGTGCAAACCAGTTTT 198951
Query 78707 AGGATTAACATAGTTAAATAAATCTTCCATTAC-ATCACT---AAATAGtttttttGTTT 78762
|| |||||||||| | | || | | |||| | |||| ||| | ||| | ||||
Sbjct 198950 GGGGTTAACATAGTCATACAACT----CCTTACTAACACTTGAAAACTGCTTTGTAGTTT 198895
Query 78763 CCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTG 78822
||||| | ||||| ||||| |||||||| || | ||||||||||| || || |
Sbjct 198894 GTTTGTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAG 198835
Query 78823 TAGTACAAGT-GGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881
|||| || || || || | ||||| ||||| |||| | ||| ||||| || || ||
Sbjct 198834 TAGT-CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCT 198776
Query 78882 TTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTC 78941
| || | ||| ||||||| | | ||||| || | ||| || | | ||
Sbjct 198775 TGGTACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCT 198716
Query 78942 AATCCATAACATAAT-TTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTT 79000
|| |||||||||||| | | || | | || || ||||||||||| ||| ||| ||
Sbjct 198715 AAGCCATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTT 198657
Query 79001 GCATCCATTTCGTTTAA 79017
|| |||| || |||||
Sbjct 198656 GCGACCATGTCTTTTAA 198640
Score = 221 bits (244), Expect = 2e-52
Identities = 590/899 (66%), Gaps = 7/899 (1%)
Strand=Plus/Minus
Query 47829 TCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTT 47888
|||| || |||||| || ||||| || |||| || | || |||||||| || ||
Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280
Query 47889 TTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttt 47948
|| ||| |||| || || ||||||||||| ||||| |||||| |||| |||| |||
Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220
Query 47949 ttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATT 48008
| |||||| | || | ||| || ||||| || || | || ||||| |
Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160
Query 48009 TCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATA 48068
| ||| ||||| || | | || || | ||| || || | |||||| | ||| |||
Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100
Query 48069 GTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGT 48128
| || || || || ||| || | | || ||| | ||| ||
Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGG 233040
Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188
|| | || || |||||||| || | ||| ||||| | | ||||| |||||
Sbjct 233039 GAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTG 232980
Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248
|| || || | ||| ||||| | || | || || | |||||| || | || || |||
Sbjct 232979 GAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGAT 232920
Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT 48308
||| ||||| || ||||| || || |||||||| ||| | || || | |||
Sbjct 232919 CCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCC 232860
Query 48309 TCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365
|||| | ||||| ||| ||||| ||||||||||| || | ||||| || ||
Sbjct 232859 TCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTC 232800
Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425
|| |||||||| || | ||||| | || ||| || || | || || || || ||
Sbjct 232799 TCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAAC 232740
Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485
| || | || ||||| |||||||| || || || || |||||||| ||| |
Sbjct 232739 AAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTG 232680
Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545
||||||| ||||| ||||| | | | || || |||| ||||| || || || |||
Sbjct 232679 GCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCA 232620
Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA-- 48603
|| |||||| |||||||| || | | | ||| || | |||||| |||
Sbjct 232619 TCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAG 232560
Query 48604 -GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662
| || |||||||||| | |||||| | ||| | ||| || || |||||||| |||
Sbjct 232559 CGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGAT 232500
Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|| |||||||| || ||||| | ||| || || ||||| || ||||||| ||||||
Sbjct 232499 GCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441
>seq5
Length=1501106
Score = 201 bits (222), Expect = 2e-46
Identities = 449/672 (67%), Gaps = 4/672 (1%)
Strand=Plus/Minus
Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985
|||| |||||||| || ||| ||||| ||||| ||||| ||| | | ||||||||
Sbjct 761888 CAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACC 761829
Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045
| || || || |||||||| ||||| || | ||| | ||||||||| || |||||
Sbjct 761828 ATTCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATA 761769
Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105
||||| ||||| ||||| || || ||| || || | || ||| | || | |
Sbjct 761768 AATCTCTGGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATA 761709
Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165
||||| |||||||||| || | |||| ||| | | | || |||| | ||||||| |
Sbjct 761708 TATCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTT 761649
Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225
|||| | |||||| || || | ||| | |||| |||||| ||||| || || | ||||
Sbjct 761648 GATCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATG 761589
Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTA 78285
||||||||| | || || || |||| | | |||| |||| ||| || ||||
Sbjct 761588 TTCCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTA 761529
Query 78286 TTCCTCCTGCCATC--TTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343
|||| || | ||| ||||| || ||||| | ||| || | ||| || || ||
Sbjct 761528 TTCCACCAG--ATCCTTTAGAAATAAGAGCAGTCTTGTGCAAAGTTTTGTATATTCCGTC 761471
Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403
||| ||||| ||| | |||||| || ||| | || | | |||||||
Sbjct 761470 AATAGAATCATCTTCCATTGCCAAAAGAAAGCAAGAAGAAAGAAAATTAAAATCAGTTCC 761411
Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463
||| ||| | | || || || ||||| |||| | ||| || | || | |||||
Sbjct 761410 TGCGTTATAGAGAGTGGGTGAAGCATGAATAAAATACCTTTTTGACATGAGGTCATATGT 761351
Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523
|||| | | || || || |||||| || | || || | || ||||||
Sbjct 761350 TTCAGCAACATCTTTTAAGTTTTCGCCATGAATGCCAATTGCCACCCTCAAAAACATAAA 761291
Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583
|||||| ||||| | | | || || |||||||| | ||||| |||| ||| |||||
Sbjct 761290 TTGAGGTGTTTCAGCAATTTCATCATCAATTTTCAAAAGATATGACTTTTGCAATGTTTT 761231
Query 78584 AAAACCAAAATA 78595
|| ||||| ||
Sbjct 761230 AACTCCAAAGTA 761219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694668626332800
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