Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 336 3e-87 seq5 201 2e-46 >seq1 Length=2974285 Score = 336 bits (372), Expect = 3e-87 Identities = 1253/1937 (65%), Gaps = 48/1937 (2%) Strand=Plus/Minus Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 77170 || ||| || || ||||| ||||| |||| ||||||||| | | ||| ||||| || Sbjct 200558 ATAAGGGTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGT 200499 Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || ||||| | | || ||||| ||||| ||||| | ||| || || || ||||| || Sbjct 200498 GTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGG 200439 Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 77290 || |||||||| |||||| | |||||| | | ||| | |||| || | ||| Sbjct 200438 AGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTA-ATGTGTCCC 200380 Query 77291 A-TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG 77349 | ||||| | || || ||||||||||| | |||| | || || | Sbjct 200379 AGTCCCACAACTCACTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGG 200320 Query 77350 CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTT 77409 | || || | || |||| |||| || || | || | ||| ||| |||| Sbjct 200319 CTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTT 200260 Query 77410 CCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATAC 77469 ||| ||| |||| || || ||||||||||||| |||| | ||| |||| | | Sbjct 200259 CCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGT-TGC 200201 Query 77470 TA-TCAAACGGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 | ||||| || ||| | || | ||||| |||||||| || ||||| || || | | Sbjct 200200 GAGTCAAAGGGC-AATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGC 200142 Query 77528 AATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTC 77587 ||| ||||||| ||| | || || |||| |||||||||| || ||| | ||| || Sbjct 200141 AATTGGTCTATTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATC 200082 Query 77588 TATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAAT- 77646 || ||| | || | || | ||| || || || || | || || ||| | Sbjct 200081 AATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTT 200022 Query 77647 ------CAAATCTT--CCATCTAT---AACAAACATGTTCAAAGCTATAGATGCTAGATT 77695 ||| | | | ||| | ||||||| | | || |||||||| | || Sbjct 200021 GTACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTT 199962 Query 77696 ACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 ||| || || ||||||| | ||| || |||| | || || ||| | ||| | Sbjct 199961 ACATACAGCAACCTCATCTGGCGA-GGAGTATTCGACAATTTCACAACACAAATTGGAAG 199903 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 ||||||| |||| || | ||| || | ||||||||||||| || || || | | Sbjct 199902 ATTTGATGACACCCAAGTTCTTTTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACA 199843 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCT 77873 | || || || |||||||| | || | || | ||| | | ||| | ||| ||| Sbjct 199842 TGAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATT-TCTGAGCC 199784 Query 77874 TTTATCATAGATTTGTATCGCCTCTCTCTTTCATATTGA--GTATATAGCCGTTCAAATT 77931 || || | | | || | || | ||| || | ||| | ||| ||||| | Sbjct 199783 TTGATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCC--TCAAACT 199726 Query 77932 CATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCAC 77991 |||| || ||||||| ||| || || ||||| || | | ||| | ||| ||| Sbjct 199725 CATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAG 199666 Query 77992 CATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 78051 ||| | || ||||| |||||||| | ||||| ||||| | || || | ||||| Sbjct 199665 CATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTC 199606 Query 78052 GGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAG 78111 | || |||||| || || ||||||| ||| ||||| || || | ||||| | Sbjct 199605 TTGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCG 199546 Query 78112 AATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTA 78171 ||||||||||| | ||||| || | | || |||| |||||||| |||||||| | Sbjct 199545 CGTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCA 199486 Query 78172 TATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCAT 78231 || | || |||||||| ||||||| | ||| ||||| ||||| ||||| || || | Sbjct 199485 CGTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGT 199426 Query 78232 TTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTC 78291 | || |||| ||| || ||| | | |||||| || ||| || || || |||| Sbjct 199425 TGGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTC 199366 Query 78292 CTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGT 78351 | || |||| || || | || || ||||| ||||| || ||||| || ||| | Sbjct 199365 CAGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAAT 199306 Query 78352 CATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAA 78411 |||| |||| || | ||| || ||||||||| | | || || ||||||| Sbjct 199305 CATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAA 199246 Query 78412 ATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAG 78471 | || || || || | || ||||| | | | || | | |||||| ||||||| Sbjct 199245 ACAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAA--- 199189 Query 78472 CTGATTCT----ATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGA 78527 ||| ||| ||||| |||||| || | || || | ||| | | |||||| Sbjct 199188 -TGACTCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGA 199130 Query 78528 GGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 78587 |||||||| | || ||| ||| | || | ||| ||| | || |||||||| ||| Sbjct 199129 GGTCTTTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAA 199070 Query 78588 CCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTG 78647 ||||| || ||||| ||| || | || | | ||| |||| | | | ||| | Sbjct 199069 CCAAAGTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCG 199010 Query 78648 TATTTGGTAACAATATC-CATGACAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT 78706 || ||||||| ||| || ||| | || || ||||| || | | |||| |||| Sbjct 199009 TACTTGGTAATAATGTCGTATGTTTCCTG-GGAGATCATAGGGGAGTGCAAACCAGTTTT 198951 Query 78707 AGGATTAACATAGTTAAATAAATCTTCCATTAC-ATCACT---AAATAGtttttttGTTT 78762 || |||||||||| | | || | | |||| | |||| ||| | ||| | |||| Sbjct 198950 GGGGTTAACATAGTCATACAACT----CCTTACTAACACTTGAAAACTGCTTTGTAGTTT 198895 Query 78763 CCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTG 78822 ||||| | ||||| ||||| |||||||| || | ||||||||||| || || | Sbjct 198894 GTTTGTGCAAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAG 198835 Query 78823 TAGTACAAGT-GGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACCCCA 78881 |||| || || || || | ||||| ||||| |||| | ||| ||||| || || || Sbjct 198834 TAGT-CATGTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCT 198776 Query 78882 TTATATAGTCCTTGAATAACTTTCATGGCGATTTTGACAGGATCTACAAACTCAGTGTTC 78941 | || | ||| ||||||| | | ||||| || | ||| || | | || Sbjct 198775 TGGTACACACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCT 198716 Query 78942 AATCCATAACATAAT-TTTCTAATACGAGATGTGATTTTATCAAATATAACATTCTCCTT 79000 || |||||||||||| | | || | | || || ||||||||||| ||| ||| || Sbjct 198715 AAGCCATAACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTT 198657 Query 79001 GCATCCATTTCGTTTAA 79017 || |||| || ||||| Sbjct 198656 GCGACCATGTCTTTTAA 198640 Score = 221 bits (244), Expect = 2e-52 Identities = 590/899 (66%), Gaps = 7/899 (1%) Strand=Plus/Minus Query 47829 TCTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTT 47888 |||| || |||||| || ||||| || |||| || | || |||||||| || || Sbjct 233338 TCTT-AGCCATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTC 233280 Query 47889 TTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAttttt 47948 || ||| |||| || || ||||||||||| ||||| |||||| |||| |||| ||| Sbjct 233279 TTTCCTGCCAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTT 233220 Query 47949 ttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATT 48008 | |||||| | || | ||| || ||||| || || | || ||||| | Sbjct 233219 TCGTTGCCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAAT 233160 Query 48009 TCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATA 48068 | ||| ||||| || | | || || | ||| || || | |||||| | ||| ||| Sbjct 233159 TTACAGTTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATA 233100 Query 48069 GTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGT 48128 | || || || || ||| || | | || ||| | ||| || Sbjct 233099 GCAACGGCCTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGG 233040 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 || | || || |||||||| || | ||| ||||| | | ||||| ||||| Sbjct 233039 GAGAATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTG 232980 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 || || || | ||| ||||| | || | || || | |||||| || | || || ||| Sbjct 232979 GAGAAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGAT 232920 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT 48308 ||| ||||| || ||||| || || |||||||| ||| | || || | ||| Sbjct 232919 CCACTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCC 232860 Query 48309 TCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTT 48365 |||| | ||||| ||| ||||| ||||||||||| || | ||||| || || Sbjct 232859 TCGTCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTC 232800 Query 48366 TCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAA 48425 || |||||||| || | ||||| | || ||| || || | || || || || || Sbjct 232799 TCAATAGCATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAAC 232740 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 | || | || ||||| |||||||| || || || || |||||||| ||| | Sbjct 232739 AAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTG 232680 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545 ||||||| ||||| ||||| | | | || || |||| ||||| || || || ||| Sbjct 232679 GCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCA 232620 Query 48546 TCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA-- 48603 || |||||| |||||||| || | | | ||| || | |||||| ||| Sbjct 232619 TCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAG 232560 Query 48604 -GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGAT 48662 | || |||||||||| | |||||| | ||| | ||| || || |||||||| ||| Sbjct 232559 CGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGAT 232500 Query 48663 GCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || |||||||| || ||||| | ||| || || ||||| || ||||||| |||||| Sbjct 232499 GCTTCTGCTTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441 >seq5 Length=1501106 Score = 201 bits (222), Expect = 2e-46 Identities = 449/672 (67%), Gaps = 4/672 (1%) Strand=Plus/Minus Query 77926 CAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACC 77985 |||| |||||||| || ||| ||||| ||||| ||||| ||| | | |||||||| Sbjct 761888 CAAAGTCATCTCCGTAACAATCGTCCAACCCAGGAGCTTCATCTGGTGAAAACAATGACC 761829 Query 77986 AGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATA 78045 | || || || |||||||| ||||| || | ||| | ||||||||| || ||||| Sbjct 761828 ATTCTAGATTTTGCTTAACTCTCTTCATGAATAAATCGGATATCCATAGTCCATAAAATA 761769 Query 78046 GATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAA 78105 ||||| ||||| ||||| || || ||| || || | || ||| | || | | Sbjct 761768 AATCTCTGGTTCGCATTTCTTGTTTGCCGTGATTTTTCTTTAAATTGAGTACATCGAATA 761709 Query 78106 TATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCT 78165 ||||| |||||||||| || | |||| ||| | | | || |||| | ||||||| | Sbjct 761708 TATCACAATGCCATGGCTCAATGTATACTGCAAAAGCACCTGGTCTCCGACTACCTCCTT 761649 Query 78166 GATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATG 78225 |||| | |||||| || || | ||| | |||| |||||| ||||| || || | |||| Sbjct 761648 GATCAACATATCTTGCAGTTTCATTGAATACTCGCAACATGGGAATTATTCCAGTTGATG 761589 Query 78226 TTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTA 78285 ||||||||| | || || || |||| | | |||| |||| ||| || |||| Sbjct 761588 TTCCATTTGAGCTAGCGATGTAGGATCCATTACCCCGAACATTATGAATATGTAAGCCTA 761529 Query 78286 TTCCTCCTGCCATC--TTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 |||| || | ||| ||||| || ||||| | ||| || | ||| || || || Sbjct 761528 TTCCACCAG--ATCCTTTAGAAATAAGAGCAGTCTTGTGCAAAGTTTTGTATATTCCGTC 761471 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 ||| ||||| ||| | |||||| || ||| | || | | ||||||| Sbjct 761470 AATAGAATCATCTTCCATTGCCAAAAGAAAGCAAGAAGAAAGAAAATTAAAATCAGTTCC 761411 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 ||| ||| | | || || || ||||| |||| | ||| || | || | ||||| Sbjct 761410 TGCGTTATAGAGAGTGGGTGAAGCATGAATAAAATACCTTTTTGACATGAGGTCATATGT 761351 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 |||| | | || || || |||||| || | || || | || |||||| Sbjct 761350 TTCAGCAACATCTTTTAAGTTTTCGCCATGAATGCCAATTGCCACCCTCAAAAACATAAA 761291 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 |||||| ||||| | | | || || |||||||| | ||||| |||| ||| ||||| Sbjct 761290 TTGAGGTGTTTCAGCAATTTCATCATCAATTTTCAAAAGATATGACTTTTGCAATGTTTT 761231 Query 78584 AAAACCAAAATA 78595 || ||||| || Sbjct 761230 AACTCCAAAGTA 761219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668626332800