Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 280 2e-70 >seq1 Length=2974285 Score = 280 bits (310), Expect = 2e-70 Identities = 1234/1929 (64%), Gaps = 32/1929 (2%) Strand=Plus/Minus Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 || ||| || |||||||| ||||| |||| ||||||||||| | ||| ||||| || Sbjct 200558 ATAAGGGTTGACAATTTGGAATTCACCAGCCAATACTCTTCTGGAGTAGATATTGGAAGT 200499 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 || ||||| | | || ||||| ||||| ||||| | ||| || || || ||||| || Sbjct 200498 GTAGGGTTCAAAGCACTCGTTGTTACCCAATATTTGGGAAGTGGATGCCGTGGGCATGGG 200439 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || |||||||| |||||| | |||||| | | ||| | |||| || | ||| Sbjct 200438 AGCAACCAATAACGAATTTCTAATACCATGCTTAGCCAATTTTTGCTTTA-ATGTGTCCC 200380 Query 75886 A-TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG 75944 | ||||| | || || ||||| ||||| | |||| | || ||| | Sbjct 200379 AGTCCCACAACTCACTGGGCTTTCTGTCCCAAAGATCAAACTGTAACAAACCCTTGGAGG 200320 Query 75945 CATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCT 76004 | || || | || ||||||||| || || | || | |||| ||| || | Sbjct 200319 CTGGAGACCCCTCGTAACTTTCGTAAGAACCCTCGACCTGCGCCAATTCGATACTGGCTT 200260 Query 76005 CTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGAC 76064 | | ||||||| || || ||||||||||||| |||| | ||| |||| | Sbjct 200259 CCACTGCACCGTGGTACATGGTTTCGAAAATCTGAATATTCAATTCTCTAGCTTGTTGCG 200200 Query 76065 TATCAAAAGGATAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 ||||| || ||| | || | ||||| |||||||| | ||||| || || | || Sbjct 200199 AGTCAAAGGGC-AATCTCAATGCCATAAAAGCATCTGCCAAACCCTGCACACCCAATGCA 200141 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCT 76183 || ||||||| ||| | || || ||| |||||||||| |||||| | ||| ||| Sbjct 200140 ATTGGTCTATTCCTCATGTTAGATCTTTTGGCTTCTGGAACGGGGTAAAAGTTACGATCA 200081 Query 76184 ATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAAT-- 76241 || ||| | || | || | | ||| || || || || | || || ||| | Sbjct 200080 ATGATTCTGTTCAAGTTACGGGTAACAACCTTGGTAACTTCATGAAGCTTCTCAAAGTTG 200021 Query 76242 -----CAAATTTT--CCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTA 76291 ||| || | | ||| | |||||| ||| || |||||||| | ||| Sbjct 200020 TACCACAAGTTGTTGCTGTCTTTTTCAACAAACGAGGGAAGTGCGATAGATGCCAAGTTA 199961 Query 76292 CAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACAC 76351 || || || ||||||| | || |||| | || || || | ||| | | Sbjct 199960 CATACAGCAACCTCATCTGGCGAGGAGTATTCGACAATTTCACAACACAAATTGGAAGAT 199901 Query 76352 TTGAT-AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 ||||| | ||||| | || ||| || | ||||| || |||| || || || | | Sbjct 199900 TTGATGACACCCAAGTTCTT-TTGATTAGTTTTTTTATTGCATGCATCTTTGTACAACAT 199842 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTT 76469 || || || || ||||| | || | || | ||| | | ||| | ||| ||| | Sbjct 199841 GAATGGGGTACCGGTTTCGGTTTGCGCCTCCAAAATGGCGTACCATAATT-TCTGAGCCT 199783 Query 76470 TTATTATAGATTTGTATCGCTTCTCTCTTTCATA-TTGT-GTATATAACCGTTCAAATTC 76527 | || | | | || || || | ||| || || | ||| | || ||||| || Sbjct 199782 TGATAGTCTTTCTTCCACGGTTTTCACGTTCGTACTTCTCGTACAATGCC--TCAAACTC 199725 Query 76528 ATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACC 76587 ||| || ||||||| |||||| | ||||| ||| | | ||| | ||||||| | Sbjct 199724 ATCACCGTAAACATCGGACAAACCTTGGGCCTCATTAGGAGAGAACAAGGTCCACTCAGC 199665 Query 76588 ATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 || | || ||| | |||||||| | ||||| ||||| | || || | ||||| Sbjct 199664 ATTCTGCTCAACTCTCTTCATAAACAAGTCAGGAATCCACAATGCTGGGAACAAATCTCT 199605 Query 76648 GGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGA 76707 | || |||||| || || ||||||| ||| ||| | ||| || | ||||| | Sbjct 199604 TGCCCTCATTTCTTCCTTACCATGATTCTTTCTAATATCGATGAAATCAAAGATATCCGC 199545 Query 76708 ATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTAT 76767 ||||||||||| | ||||| || | |||| |||| |||||||| |||||||| | Sbjct 199544 GTGCCATGGTTCCAAATATAAGGCAAATGCACCGGGTCTCTTATTACCACCCTGATCCAC 199485 Query 76768 ATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATT 76827 || | ||||||||||| ||||||| | ||| ||||| || || ||||| ||||| || Sbjct 199484 GTAACGAGCAGTGTTATTGAAAACTCTAACCATAGGAATGATACCATTAGAGGTACCGTT 199425 Query 76828 TGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCC 76887 || |||| ||| || ||| | ||||| || || || || || ||||| Sbjct 199424 GGTACCAGCAATGTAGGCACCAGTCGAGCGAATGTTGTGTATGTGTAAACCAATACCTCC 199365 Query 76888 TGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATC 76947 || | || || || | ||||| ||||| || ||||| || || || ||| ||| Sbjct 199364 AGCACTCTTGGAAATCAAGGCACATGTCTTCAAGGTATCATAAATACCGTCAATAGAATC 199305 Query 76948 ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 77007 ||| |||| || | ||| || ||||||||| | | || || |||||||| Sbjct 199304 ATCTTTCATAGCAATCAAAAAGCACGAGGACATTTGAGGGTTGGGTGTACCAGCATTAAA 199245 Query 77008 CAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067 ||| ||||| || | || || || | | | || | | |||||| |||||||| || Sbjct 199244 CAAAGTAGGCGAGCCGTGGGTAAAGTGTCTCTGGGACATCATATTGTAAGTTTCAATGAC 199185 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 | || || |||||| || | || || | ||| | | |||||||||| Sbjct 199184 TCTGGGAATGTCGTCACCATGAATACCAATGGCAACTCTCATAATTAAGTGCTGAGGTCT 199125 Query 77128 TTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAA 77187 |||| | || ||| ||| | || | ||| ||| | || |||||||| |||||||| Sbjct 199124 TTCTGCGACTTTGCCATTAATTCTTAAAAGGTAAGATCTCTCTAAAGTTTTGAAACCAAA 199065 Query 77188 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 || ||||| ||| || | || | | ||| | || | | | || || || Sbjct 199064 GTAATTGTAGTTAAAATCACGATCAAATACAATTGCAGAGTCCAAGTCATCAGCGTACTT 199005 Query 77248 GGTAACAATATC-CATG-ACAGTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGA 77305 ||||| ||| || ||| ||| || || || || || | | ||| |||| || Sbjct 199004 GGTAATAATGTCGTATGTTTCCTGG--GAGATCATAGGGGAGTGCAAACCAGTTTTGGGG 198947 Query 77306 TTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGT 77365 |||||||||| | | || || | | || ||| | ||| | |||| ||||| Sbjct 198946 TTAACATAGTCATACAACTCCTTACTAACACTTGAAAACTGCTTTGTAGTTTGTTTGTGC 198887 Query 77366 AGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAG 77425 | || || || || ||||| || || | || ||||| || || || ||||| || Sbjct 198886 AAGTTAGAAACAGCAATTCTTGCTGCCAAGATAGCATAATCTGGGTGGATAGTAGT-CAT 198828 Query 77426 GT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAG 77484 || || || | ||||| ||||| |||| | || ||||| ||||| || | || | Sbjct 198827 GTATGCGGCAGTCTCTGCTGCTAAGTTATCAAGCTCAATAGTGGTAACACCTTGGTACAC 198768 Query 77485 CCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATA 77544 ||| ||||||| | | |||| | | ||| || | || || || ||||| Sbjct 198767 ACCTGAAATAACTCTTTGAGTGATTTGCACGGCATCAACGTGATTGGAGTCTAAGCCATA 198708 Query 77545 ACATAAT-TTTCTAATACGAGATGTGATTTTATCAAACATGACATTCTCCTTACATCCAT 77603 ||||||| | | || | | || || ||||||||||| |||| ||| || | |||| Sbjct 198707 ACATAATCTCTGTACT-CTAGCAGTAATTTTATCAAAACGGACAGGCTCTTTGCGACCAT 198649 Query 77604 TTCGTTTAA 77612 || ||||| Sbjct 198648 GTCTTTTAA 198640 Score = 228 bits (252), Expect = 1e-54 Identities = 586/891 (66%), Gaps = 6/891 (1%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 |||||| || |||||||| |||| || | || |||||||| || || || ||| | Sbjct 233331 CATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGC 233272 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 ||| || || ||||||||||| ||||| |||||||||||||| |||| |||| || Sbjct 233271 CAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAACCTTTTCGTTGCC 233212 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 |||| | || | ||| || ||||| || || | ||| ||||| || ||| || Sbjct 233211 TAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAGTT 233152 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || | | | || | ||| || || | |||||| | |||||||| || || Sbjct 233151 CATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACGGC 233092 Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACAT 46625 || | || ||| || | | || ||| | ||| || || | Sbjct 233091 CTCTGTGATAATCTTCTCGACAATAGCAGCATCGGGTCTGTTTTGCAAGTGGGAGAATAA 233032 Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 || || |||||||| || | || ||||| | | ||||| ||||| || || || Sbjct 233031 CAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAGAAAGT 232972 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | |||||||| | || | ||| || | |||||| || | || || |||||| || Sbjct 232971 CAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCACTGAA 232912 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||| || ||||| ||||| || ||||| ||||| | || || | ||| || | || Sbjct 232911 GAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCGTCATC 232852 Query 46806 A---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| | | |||||| |||||||| || || | ||||| || || || ||||| Sbjct 232851 ACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCAATAGC 232792 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 ||| || | ||||| | || | || || | ||| || || || || | || Sbjct 232791 ATTGAATAAAAAGTCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAACAAGGAGTA 232732 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 | ||||| || || ||||| || || || || |||||||| ||| | ||||| | Sbjct 232731 GGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTGGCTTCTGG 232672 Query 46983 AATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGC 47042 |||||| ||||| | | | || || ||| ||||| || || || ||||| ||| Sbjct 232671 AATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCATCGGAAGC 232612 Query 47043 AGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATT 47099 ||| ||||||||||| | | | ||| || | || | | ||| | || || Sbjct 232611 AGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTTGTCGTTCAAGCGATTGTT 232552 Query 47100 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 |||||||| | |||||| | ||| | ||| || || ||||| || || || ||||| Sbjct 232551 CCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGATGCTTCTGC 232492 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 ||| || ||||| | ||| || || | |||| || || |||| |||||| Sbjct 232491 TTTCTTGTACATTTGCCAAATCTCGTGGTATTTAATAGGGAAAAGAACAAA 232441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934221766400