Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1 116 9e-21
seq7 96.9 8e-15
>seq1
Length=2974285
Score = 116 bits (128), Expect = 9e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||||||||| |||||||| ||||| || ||||| || | ||| ||||| |||||||||
Sbjct 1360609 ACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATCTTCT 1360668
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
| || || ||||| || | ||||||||||| | | || || ||||| || |||
Sbjct 1360669 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360728
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||||| | || | |||| || || || ||||| |||||||||||
Sbjct 1360729 ATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1360788
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | ||||| || |||| |||||
Sbjct 1360789 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 113 bits (124), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||||||||| |||||||| || || || ||||| || | ||| ||||| |||||||||
Sbjct 1360837 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1360896
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
| || || ||||| || | ||||||||||| | | || || ||||| || |||
Sbjct 1360897 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360956
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||||| | || | |||| || || || ||||| |||||||||||
Sbjct 1360957 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361016
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | ||||| || |||| |||||
Sbjct 1361017 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 113 bits (124), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||||||||| |||||||| || || || ||||| || | ||| ||||| |||||||||
Sbjct 1361065 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361124
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
| || || ||||| || | ||||||||||| | | || || ||||| || |||
Sbjct 1361125 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361184
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||||| | || | |||| || || || ||||| |||||||||||
Sbjct 1361185 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361244
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || | ||||| || |||| |||||
Sbjct 1361245 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Score = 113 bits (124), Expect = 1e-19
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955
||||||||||| |||||||| || || || ||||| || | ||| ||||| |||||||||
Sbjct 1361293 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361352
Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015
| || || ||||| || | ||||||||||| | | || || ||||| || |||
Sbjct 1361353 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361412
Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075
|| || ||||| | || | |||| || || || ||||| |||||||||||
Sbjct 1361413 ATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361472
Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
|| || | ||||| || |||| ||||||
Sbjct 1361473 CCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502
>seq7
Length=860703
Score = 96.9 bits (106), Expect = 8e-15
Identities = 147/208 (71%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||||||||| |||||||||||||| || | | ||| | || || || |
Sbjct 37839 CAAG-TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCA 37781
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| || || || || | || |||||||| | | || |||||||| || ||||
Sbjct 37780 ATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAA 37721
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| ||| ||| || ||||| || ||||| || |
Sbjct 37720 TCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTAC 37661
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || | ||||| ||||| | |||||
Sbjct 37660 CGGTTAAGGTCTTGACGAAAATTTGCAT 37633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820504333420
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |