Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 116 9e-21 seq7 96.9 8e-15 >seq1 Length=2974285 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| ||||| || ||||| || | ||| ||||| ||||||||| Sbjct 1360609 ACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGATAACGTTCTTCCATCTTCT 1360668 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || ||||| || | ||||||||||| | | || || ||||| || ||| Sbjct 1360669 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360728 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || || || ||||| ||||||||||| Sbjct 1360729 ATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1360788 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| ||||| Sbjct 1360789 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 113 bits (124), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| || || || ||||| || | ||| ||||| ||||||||| Sbjct 1360837 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1360896 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || ||||| || | ||||||||||| | | || || ||||| || ||| Sbjct 1360897 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1360956 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || || || ||||| ||||||||||| Sbjct 1360957 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361016 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| ||||| Sbjct 1361017 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 113 bits (124), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| || || || ||||| || | ||| ||||| ||||||||| Sbjct 1361065 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361124 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || ||||| || | ||||||||||| | | || || ||||| || ||| Sbjct 1361125 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361184 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || || || ||||| ||||||||||| Sbjct 1361185 ATCTTGGACTTGACRTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361244 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | ||||| || |||| ||||| Sbjct 1361245 CCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| |||||||| || || || ||||| || | ||| ||||| ||||||||| Sbjct 1361293 ACAAGATGAAGTGTAGACTCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCT 1361352 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || ||||| || | ||||||||||| | | || || ||||| || ||| Sbjct 1361353 AATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGA 1361412 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || ||||| | || | |||| || || || ||||| ||||||||||| Sbjct 1361413 ATCTTGGACTTGACGTTGTCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTT 1361472 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || | ||||| || |||| |||||| Sbjct 1361473 CCAGTCAAGGTCTTTACAAAGATTTGCATT 1361502 >seq7 Length=860703 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| |||||||||||||| || | | ||| | || || || | Sbjct 37839 CAAG-TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCA 37781 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || || || | || |||||||| | | || |||||||| || |||| Sbjct 37780 ATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAA 37721 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| ||| ||| || ||||| || ||||| || | Sbjct 37720 TCTTGGACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTAC 37661 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | ||||| Sbjct 37660 CGGTTAAGGTCTTGACGAAAATTTGCAT 37633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820504333420