Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 150 4e-31 seq6 127 4e-24 seq1 116 8e-21 >seq7 Length=860703 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||||||||||| ||| || ||||| ||||| | ||| || || ||||| Sbjct 37823 TCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAA 37764 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | ||| |||||| |||||||| |||||||| || ||||| | || || | Sbjct 37763 ATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTG 37704 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || ||||| |||| || || || || ||||| |||||||| || || ||||| ||| Sbjct 37703 TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACG 37644 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 37643 AAAATTTGCAT 37633 >seq6 Length=1507273 Score = 127 bits (140), Expect = 4e-24 Identities = 184/256 (72%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 316950 GAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGT 317009 ||| ||| ||| ||| |||| || | || || || | ||||||||||||||| |||| Sbjct 504793 GAACTCAGCGACAGAGGTGTCAGCGTGGGTACCATCAATGTCATGCTCAACATAGACAGT 504852 Query 317010 TTTCAGAAT-ATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCA 317068 || | | | |||| || ||||| || || | ||||| || |||| || ||||||| Sbjct 504853 CTT-ACATTCCTCCTGAGTGGGGAAACCCTCAACTTGACCATTGGCAATAGCTCTCATCA 504911 Query 317069 GTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATA---CCGATTTCCCTTCTTCA 317125 || ||||| || ||||| || || || ||||||||||| | |||| |||||| Sbjct 504912 AGGTGGACTTACCGGCACCGTTAGGACCACAAAGACCATATCTTCTGTTTC---TCTTCA 504968 Query 317126 GATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAAT 317185 | || | || ||||||| | |||||| |||| || || |||||||||||||| | Sbjct 504969 ATCTGAATTGAGTCTTGTTCAACAAGATCTTAGCACCGTAGGCAAGAGAGAACTCACAGT 505028 Query 317186 CACACAGGTCCTCGCC 317201 ||||| |||||| || Sbjct 505029 TACACAAGTCCTCACC 505044 >seq1 Length=2974285 Score = 116 bits (128), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | | ||| ||||| | ||| || ||||| || |||||||| | Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| | ||||| |||| ||| || || || || ||||| | || ||||| || Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || || | || |||||||| || | ||| || Sbjct 1360710 AATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAAC 1360769 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || || || || ||||| ||||| || || || ||||| Sbjct 1360770 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 116 bits (128), Expect = 8e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || |||||||| | | ||| | |||||| |||| ||| || || || || Sbjct 1361311 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1361370 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||||||||||||||| || ||||| | || ||| | Sbjct 1361371 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 1361430 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | ||| || || || || || || || || ||||| ||||| || Sbjct 1361431 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACA 1361490 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 1361491 AAGATTTGCATT 1361502 Score = 113 bits (124), Expect = 9e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || |||||||| | | ||| | |||||| |||| ||| || || || || Sbjct 1360855 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1360914 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||||||||||||||| || ||||| | || || | Sbjct 1360915 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTG 1360974 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | ||| || || || || || || || || ||||| ||||| || Sbjct 1360975 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACA 1361034 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 1361035 AAGATTTGCAT 1361045 Score = 113 bits (124), Expect = 9e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || |||||||| | | ||| | |||||| |||| ||| || || || || Sbjct 1361083 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1361142 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || ||||| ||||||||||||||||| || ||||| | || || | Sbjct 1361143 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTG 1361202 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||| || | ||| || || || || || || || || ||||| ||||| || Sbjct 1361203 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACA 1361262 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 1361263 AAGATTTGCAT 1361273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738931773080