Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq7 150 4e-31
seq6 127 4e-24
seq1 116 8e-21
>seq7
Length=860703
Score = 150 bits (166), Expect = 4e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||||||||||||||||| ||| || ||||| ||||| | ||| || || |||||
Sbjct 37823 TCCTTTTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAA 37764
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | ||| |||||| |||||||| |||||||| || ||||| | || || |
Sbjct 37763 ATCAATCTTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTG 37704
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || ||||| |||| || || || || ||||| |||||||| || || ||||| |||
Sbjct 37703 TCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACG 37644
Query 283089 AATATCTGCAT 283099
|| || |||||
Sbjct 37643 AAAATTTGCAT 37633
>seq6
Length=1507273
Score = 127 bits (140), Expect = 4e-24
Identities = 184/256 (72%), Gaps = 8/256 (3%)
Strand=Plus/Plus
Query 316950 GAAGTCAACGATAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGT 317009
||| ||| ||| ||| |||| || | || || || | ||||||||||||||| ||||
Sbjct 504793 GAACTCAGCGACAGAGGTGTCAGCGTGGGTACCATCAATGTCATGCTCAACATAGACAGT 504852
Query 317010 TTTCAGAAT-ATCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCA 317068
|| | | | |||| || ||||| || || | ||||| || |||| || |||||||
Sbjct 504853 CTT-ACATTCCTCCTGAGTGGGGAAACCCTCAACTTGACCATTGGCAATAGCTCTCATCA 504911
Query 317069 GTGTCGACTTGCCAGCACCATTGGGGCCGCAAAGACCATA---CCGATTTCCCTTCTTCA 317125
|| ||||| || ||||| || || || ||||||||||| | |||| ||||||
Sbjct 504912 AGGTGGACTTACCGGCACCGTTAGGACCACAAAGACCATATCTTCTGTTTC---TCTTCA 504968
Query 317126 GATTAAAACGGGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAAT 317185
| || | || ||||||| | |||||| |||| || || |||||||||||||| |
Sbjct 504969 ATCTGAATTGAGTCTTGTTCAACAAGATCTTAGCACCGTAGGCAAGAGAGAACTCACAGT 505028
Query 317186 CACACAGGTCCTCGCC 317201
||||| |||||| ||
Sbjct 505029 TACACAAGTCCTCACC 505044
>seq1
Length=2974285
Score = 116 bits (128), Expect = 8e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| | || | | ||| ||||| | ||| || ||||| || |||||||| |
Sbjct 1360590 ACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTAGTCTGA 1360649
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| ||| | ||||| |||| ||| || || || || ||||| | || ||||| ||
Sbjct 1360650 TAACGTTCTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGGTCTGGTGG 1360709
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||| || ||||| | || || | || |||||||| || | ||| ||
Sbjct 1360710 AATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAGGATTCAAC 1360769
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || || || || || || ||||| ||||| || || || |||||
Sbjct 1360770 CTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 116 bits (128), Expect = 8e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || || |||||||| | | ||| | |||||| |||| ||| || || || ||
Sbjct 1361311 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1361370
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | || ||||| ||||||||||||||||| || ||||| | || ||| |
Sbjct 1361371 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 1361430
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| |||||||| || | ||| || || || || || || || || ||||| ||||| ||
Sbjct 1361431 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACA 1361490
Query 283089 AATATCTGCATT 283100
|| || ||||||
Sbjct 1361491 AAGATTTGCATT 1361502
Score = 113 bits (124), Expect = 9e-20
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || || |||||||| | | ||| | |||||| |||| ||| || || || ||
Sbjct 1360855 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1360914
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | || ||||| ||||||||||||||||| || ||||| | || || |
Sbjct 1360915 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTG 1360974
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| |||||||| || | ||| || || || || || || || || ||||| ||||| ||
Sbjct 1360975 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACA 1361034
Query 283089 AATATCTGCAT 283099
|| || |||||
Sbjct 1361035 AAGATTTGCAT 1361045
Score = 113 bits (124), Expect = 9e-20
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || || |||||||| | | ||| | |||||| |||| ||| || || || ||
Sbjct 1361083 TCCTTCTGAATATTGTAGTCTGATAACGTTCTGCCATCTTCTAATTGCTTACCAGCGAAA 1361142
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||||| | || ||||| ||||||||||||||||| || ||||| | || || |
Sbjct 1361143 ATCAATCTCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTG 1361202
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| |||||||| || | ||| || || || || || || || || ||||| ||||| ||
Sbjct 1361203 TCAATAGTGTCAGAGGATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACA 1361262
Query 283089 AATATCTGCAT 283099
|| || |||||
Sbjct 1361263 AAGATTTGCAT 1361273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738931773080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |