Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=2974285 Score = 138 bits (152), Expect = 1e-27 Identities = 559/873 (64%), Gaps = 21/873 (2%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||||||||| ||||| || || | ||| | |||||||||| || ||||| || | Sbjct 233331 CATAACACCAGCCTTTTGGTAGTCACTAACTCTCTTTTCGAAAAAGTTGGTCTTTCCTGC 233272 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 || || || ||||||||||| ||||| ||||||| | ||| || || |||| | | Sbjct 233271 CAACGAAATGTTTTCCATAAAGTCAAAGGGATTAGTAACATTGTAAAC--CTTTTCGTTG 233214 Query 23325 --TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 |||| | | | || || || ||||| || | || || |||||||| | | || Sbjct 233213 CCTAATGCGACAAGTAATCTGTCGGCAACAAACTCCACGTACTGGCACATCAATTTACAG 233154 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442 || ||||| | | | || | |||||| || || |||||||| | ||| Sbjct 233153 TTCATACCCAACAACGAAATAGGCAAAGCATCAGTGAAAAACTCCTTTTCAATAGCAACG 233094 Query 23443 GCATCTTTAATTATTTGA---ACAATAACTTCTTCACTAGGTGGATATTTTAAATACTTA 23499 || ||| | || || | |||||| | | || ||| | || || | Sbjct 233093 GCCTCTGTGATAATCTTCTCGACAATAGCAGCATCG---GGTCTGTTTTGCAAGTGGGAG 233037 Query 23500 AACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAA 23559 || || || || |||||||| || | || ||||| | | || || || || || Sbjct 233036 AATAACAAGCAAGCAAAATCGGTGTGCAAACCCTCATCACGGCAGATTAACTCGTTGGAG 232977 Query 23560 AATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCG 23619 || || || || ||||| || |||| || || | |||||| || | ||||| ||||| Sbjct 232976 AAAGTCAAACCAGGCATCAAGCCTCTCTTCTTCAACCAAAAGATGGATGCAAACGATCCA 232917 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 ||||||||||| |||||||| ||||| || ||||||||| |||||| || | Sbjct 232916 CTGAAGAAAATACCTTCAACAGCAGCAAATGCAACAAGACGTTCGCCAAATAAGGCCTCG 232857 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 | |||| ||||| | | ||| | ||||||| ||| | || ||| || ||| Sbjct 232856 TCATCACTGATCCAGCGTAAAGCCCAGTCAGCCTTCTTTTTGATGCAAGGAATAGTCTCA 232797 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGT 23796 || || || || | ||||| | | | || || || | ||||| || || || | Sbjct 232796 ATAGCATTGAATA-AAAAG--TCTGCCTCCTTGGGGTCCTTGATATAGGTGTCGATCAAC 232740 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 || || | || || || |||||||| || || || || || ||||| ||| | Sbjct 232739 AAGGAGTAGGTCTCTGAGTGGATATTTTCCATCATGATTTGGAAACCGTAAAAGCATTTG 232680 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | ||||| || | | || | | | || || ||||||||||||||| Sbjct 232679 GCTTCTGGAATCTGAACCTCGGCAGAGAAGTTCTCCACCAAGTTCTCGTTAACAATACCA 232620 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACA----TATTTTATAAAATGTCTTTCATCAGTTGA 23972 || |||||| || || || | || | | | | ||| || || || | | Sbjct 232619 TCGGAAGCAGCGAAAAATGCCAAAATACGGGAAATGAAGAAACGCTCGTT-GTCGTTCAA 232561 Query 23973 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACT 24032 || ||||| |||| | | |||||| ||||| | ||| || | ||||||||| Sbjct 232560 GCGATTGTTCCAGTCATGAGTGTCTTTTCCCAAATCGATTTCCTCTGCAGTCCAAAAAGA 232501 Query 24033 TGCCAAGGCACGCTTATACATTAGCCAAATATC 24065 ||| || ||| |||||| ||||||| || Sbjct 232500 TGCTTCTGCTTTCTTGTACATTTGCCAAATCTC 232468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487869628000