Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03-
01] 20 sequences; 13,178,500 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq7 149 5e-31
seq1 116 3e-21
>seq7
Length=860703
Score = 149 bits (164), Expect = 5e-31
Identities = 174/233 (75%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| ||||||| ||||||||||| |||||| || |||||||||||||||||| || |
Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| || |||| |||| ||||| || ||||| ||||| | ||||| || | ||
Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| ||||||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGT--CAATGGTGTCGGAAGACTCCA 37682
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
|||| | || || ||||| || || | |||||| ||||| ||||||||||||
Sbjct 37681 CCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATGATG 37629
>seq1
Length=2974285
Score = 116 bits (128), Expect = 3e-21
Identities = 168/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| |||||| || || |||||||| ||||||||| || |||||
Sbjct 1360584 TTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTA 1360643
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| | | || || | ||||| || || || ||||| | ||||||
Sbjct 1360644 GTCTGATAACGTT--CTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1360701
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281
|||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | |
Sbjct 1360702 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAG 1360761
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| | ||||| || ||||| || | |||||| || |||||||||||
Sbjct 1360762 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817
Score = 107 bits (118), Expect = 1e-18
Identities = 171/242 (71%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| |||||| || || ||||| || |||||| || || |||||
Sbjct 1361268 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1361327
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| || | || || | ||||| || || || ||||| | ||||||
Sbjct 1361328 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361385
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281
|||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | |
Sbjct 1361386 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAG 1361445
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
||||| ||||| | ||||| || ||||| || | |||||| || ||||||||||| ||
Sbjct 1361446 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTG 1361505
Query 44342 TG 44343
||
Sbjct 1361506 TG 1361507
Score = 105 bits (116), Expect = 5e-18
Identities = 167/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| |||||| || || ||||| || |||||| || || |||||
Sbjct 1360812 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1360871
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| || | || || | ||||| || || || ||||| | ||||||
Sbjct 1360872 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1360929
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281
|||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | |
Sbjct 1360930 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1360989
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| | ||||| || ||||| || | |||||| || |||||||||||
Sbjct 1360990 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045
Score = 105 bits (116), Expect = 5e-18
Identities = 167/236 (71%), Gaps = 4/236 (2%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || ||||||| |||||| || || ||||| || |||||| || || |||||
Sbjct 1361040 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1361099
Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221
|| | | ||| || | || || | ||||| || || || ||||| | ||||||
Sbjct 1361100 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361157
Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281
|||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | |
Sbjct 1361158 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1361217
Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| ||||| | ||||| || ||||| || | |||||| || |||||||||||
Sbjct 1361218 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359990312252340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |