Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamia_20fluorescens_20[genbank_20GCA_5F001599155.1_202016-03- 01] 20 sequences; 13,178,500 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7 149 5e-31 seq1 116 3e-21 >seq7 Length=860703 Score = 149 bits (164), Expect = 5e-31 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||| ||||||||||| |||||| || |||||||||||||||||| || | Sbjct 37859 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 37800 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || |||| |||| ||||| || ||||| ||||| | ||||| || | || Sbjct 37799 AGAGTACGGCCGTCCTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGGGGA 37740 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||||||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 37739 ATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGT--CAATGGTGTCGGAAGACTCCA 37682 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| | || || ||||| || || | |||||| ||||| |||||||||||| Sbjct 37681 CCTCAAGGGTGATAGTCTTACCGGTTAAGGTCTTGACGAAAATTTGCATGATG 37629 >seq1 Length=2974285 Score = 116 bits (128), Expect = 3e-21 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || || |||||||| ||||||||| || ||||| Sbjct 1360584 TTACATACCACCTCTCAATCTCAATACAAGATGAAGCGTAGACTCCTTTTGAATATTGTA 1360643 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| | | || || | ||||| || || || ||||| | |||||| Sbjct 1360644 GTCTGATAACGTT--CTTCCATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1360701 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | | Sbjct 1360702 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACKTTGTCAATAGTGTCAGAG 1360761 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||||| || ||||| || | |||||| || ||||||||||| Sbjct 1360762 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1360817 Score = 107 bits (118), Expect = 1e-18 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || || ||||| || |||||| || || ||||| Sbjct 1361268 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1361327 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| || | || || | ||||| || || || ||||| | |||||| Sbjct 1361328 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361385 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | | Sbjct 1361386 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCAGAG 1361445 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| ||||| | ||||| || ||||| || | |||||| || ||||||||||| || Sbjct 1361446 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTTACAAAGATTTGCATTGTG 1361505 Query 44342 TG 44343 || Sbjct 1361506 TG 1361507 Score = 105 bits (116), Expect = 5e-18 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || || ||||| || |||||| || || ||||| Sbjct 1360812 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1360871 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| || | || || | ||||| || || || ||||| | |||||| Sbjct 1360872 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1360929 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | | Sbjct 1360930 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1360989 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||||| || ||||| || | |||||| || ||||||||||| Sbjct 1360990 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361045 Score = 105 bits (116), Expect = 5e-18 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || || ||||| || |||||| || || ||||| Sbjct 1361040 TTGCATACCACCTCTCAATCTCAATACAAGATGAAGTGTAGACTCCTTCTGAATATTGTA 1361099 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | | ||| || | || || | ||||| || || || ||||| | |||||| Sbjct 1361100 GTCTGATAACGTTCT-GC-CATCTTCTAATTGCTTACCAGCGAAAATCAATCTCTGCTGG 1361157 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | ||| ||||| ||| ||||| ||| | | | || ||||| | | Sbjct 1361158 TCTGGTGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACRTTGTCAATAGTGTCAGAG 1361217 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| | ||||| || ||||| || | |||||| || ||||||||||| Sbjct 1361218 GATTCAACCTCAAGGGTAATAGTTTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 1361273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990312252340