Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 239 5e-58 seq1 122 9e-23 seq2 105 7e-18 >seq3 Length=2099697 Score = 239 bits (264), Expect = 5e-58 Identities = 526/781 (67%), Gaps = 13/781 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| | || || || | || || || |||| || || |||| ||| Sbjct 1027343 GAGAACCCGGGTCGCTTTGTACTATTTCCTATCAGGTACCATGAAATTTGGCAGGCGTAT 1027402 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || ||||| || |||||||| | ||| ||| | || || ||||| || Sbjct 1027403 AAGAAAGCGGAGGCCTCTTTCTGGACTGCCGAAGAGATTGATCTCGGTAAGGATTTGAAT 1027462 Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 |||||||| ||| ||||| | | ||||| ||||| | | || || || ||| Sbjct 1027463 GACTGGGACAATCGCATGAACAAGGATGAGCGATTCTTCATTTCGAATGTACTCGCATTT 1027522 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||| ||||||||| ||||||||||| ||||| ||||| ||| || || ||| Sbjct 1027523 TTCGCAGCCTCCGACGGCATTGTCAACGAGAACCTGGTTGAGCGGTTCTCTGGTGAAGTG 1027582 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | ||||| ||| || || || || || ||| |||||||| | |||||| Sbjct 1027583 CAAATCCCTGAGGCAAAGTGTTTTTATGGATTCCAAATCATGATGGAGAATATTCACTCG 1027642 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGT 116944 || | || || ||| || ||||| || | | || | ||| ||| || Sbjct 1027643 GAGACTTACTCACTCCTGATTGACACATATATTAAGGATCCGAAAGAGGCACAGCACC-- 1027700 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 |||| || ||||| ||||| || || ||| | | ||||| |||||||| ||||| Sbjct 1027701 -TGTTCAATGCCATTGAGACCATTCCCTGCATTGCTAAAAAGGCTAAGTGGGCGTTGCGC 1027759 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||| | | ||| || | || | |||||||| ||||| || || || || ||| Sbjct 1027760 TGGATCAGTGATCGCGAGTCCACATTTGCAGAGCGCCTTGTGGCGTTTGCTGCTGTTGAG 1027819 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || ||||||| || ||| |||||| ||| || ||||| ||||| |||||||||||| Sbjct 1027820 GGGATCTTCTTCTCAGGCTCTTTCGCAAGCATCTTCTGGCTAAAGAAGCGCGGCCTCATG 1027879 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184 || || || || || || ||||| || || | || || ||| ||||| || ||| Sbjct 1027880 CCTGGTCTTACATTTTCTAATGAGCTAATTTCTCGCGATGAAGGTATGCATACTGATTTT 1027939 Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGAT 117243 || || | |||||| ||| | | | || ||| |||| | | | || | ||| Sbjct 1027940 GCTTGCCTCTTGTTCACGCACCTTGAAAACCGCCCG-TCGCGTGAGATCATCGAGCGGAT 1027998 Query 117244 CGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303 |||| || ||||| | |||||| || |||||||| || ||||| || || ||| Sbjct 1027999 TATCACTGAGGCGGTTGAGATCGAGAAGGAATTCCTCACTGATGCGCTCCCCGTATCTCT 1028058 Query 117304 GCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGC 117362 |||| | || ||| || | |||| || ||||| |||||||| |||||| | ||| Sbjct 1028059 TTTGGGCATGAA-TGCAAAGCTCATGTGCCAGTACATTGAGTTCGTTGCCGACCGCTTGC 1028117 Query 117363 T 117363 | Sbjct 1028118 T 1028118 >seq1 Length=3734243 Score = 122 bits (134), Expect = 9e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| Sbjct 2696101 AAGATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAAAGT 2696160 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | ||| || ||| |||||||||||| ||||| | || Sbjct 2696161 TCGGATACGATCGATGCCGTTAAGAGCAAGATTGCCGACAAAGAGGGTATCCCTCCTGAT 2696220 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||| | ||| ||||| ||| |||| || | || || ||| |||||| Sbjct 2696221 CAGCAGCGACTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACGCTCTCGGACTAC 2696280 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921 |||||||| |||||| | || || || |||||| | ||| | | || || |||| Sbjct 2696281 AACATCCAAAAGGAGTCTACACTTCACCTAGTGCTTCGCCTTCGTGGTGGTGGCT 2696335 >seq2 Length=2224469 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||| || |||| || || | Sbjct 961341 ATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACCATTACGCTCGAGGTTGAGAGTTCG 961400 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || ||| ||| || |||||||||||| | |||||| Sbjct 961401 GATACCATTGACGCTGTCAAGAGCAAGATTGCCGATAAGGAGGGCATCCCCCCTGACCAG 961460 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || || | || |||||| |||||||| Sbjct 961461 CAGCGTCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACCCTCTCGGACTACAAT 961520 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 || || |||||| | || || || || ||| | ||| Sbjct 961521 ATTCAAAAGGAGTCGACTCTACACCTTGTGCTTCGC 961556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219174239040