Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016-
03-01] 4 sequences; 8,470,812 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3 239 5e-58
seq1 122 9e-23
seq2 105 7e-18
>seq3
Length=2099697
Score = 239 bits (264), Expect = 5e-58
Identities = 526/781 (67%), Gaps = 13/781 (2%)
Strand=Plus/Plus
Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650
|||||||| | || || || | || || || |||| || || |||| |||
Sbjct 1027343 GAGAACCCGGGTCGCTTTGTACTATTTCCTATCAGGTACCATGAAATTTGGCAGGCGTAT 1027402
Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710
|| || || ||||| || |||||||| | ||| ||| | || || ||||| ||
Sbjct 1027403 AAGAAAGCGGAGGCCTCTTTCTGGACTGCCGAAGAGATTGATCTCGGTAAGGATTTGAAT 1027462
Query 116711 GACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767
|||||||| ||| ||||| | | ||||| ||||| | | || || || |||
Sbjct 1027463 GACTGGGACAATCGCATGAACAAGGATGAGCGATTCTTCATTTCGAATGTACTCGCATTT 1027522
Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827
||||| ||| ||||||||| ||||||||||| ||||| ||||| ||| || || |||
Sbjct 1027523 TTCGCAGCCTCCGACGGCATTGTCAACGAGAACCTGGTTGAGCGGTTCTCTGGTGAAGTG 1027582
Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887
|| | | ||||| ||| || || || || || ||| |||||||| | ||||||
Sbjct 1027583 CAAATCCCTGAGGCAAAGTGTTTTTATGGATTCCAAATCATGATGGAGAATATTCACTCG 1027642
Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGT 116944
|| | || || ||| || ||||| || | | || | ||| ||| ||
Sbjct 1027643 GAGACTTACTCACTCCTGATTGACACATATATTAAGGATCCGAAAGAGGCACAGCACC-- 1027700
Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004
|||| || ||||| ||||| || || ||| | | ||||| |||||||| |||||
Sbjct 1027701 -TGTTCAATGCCATTGAGACCATTCCCTGCATTGCTAAAAAGGCTAAGTGGGCGTTGCGC 1027759
Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064
|||||| | | ||| || | || | |||||||| ||||| || || || || |||
Sbjct 1027760 TGGATCAGTGATCGCGAGTCCACATTTGCAGAGCGCCTTGTGGCGTTTGCTGCTGTTGAG 1027819
Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124
|| ||||||| || ||| |||||| ||| || ||||| ||||| ||||||||||||
Sbjct 1027820 GGGATCTTCTTCTCAGGCTCTTTCGCAAGCATCTTCTGGCTAAAGAAGCGCGGCCTCATG 1027879
Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTT 117184
|| || || || || || ||||| || || | || || ||| ||||| || |||
Sbjct 1027880 CCTGGTCTTACATTTTCTAATGAGCTAATTTCTCGCGATGAAGGTATGCATACTGATTTT 1027939
Query 117185 GCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGAT 117243
|| || | |||||| ||| | | | || ||| |||| | | | || | |||
Sbjct 1027940 GCTTGCCTCTTGTTCACGCACCTTGAAAACCGCCCG-TCGCGTGAGATCATCGAGCGGAT 1027998
Query 117244 CGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCT 117303
|||| || ||||| | |||||| || |||||||| || ||||| || || |||
Sbjct 1027999 TATCACTGAGGCGGTTGAGATCGAGAAGGAATTCCTCACTGATGCGCTCCCCGTATCTCT 1028058
Query 117304 GCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGC 117362
|||| | || ||| || | |||| || ||||| |||||||| |||||| | |||
Sbjct 1028059 TTTGGGCATGAA-TGCAAAGCTCATGTGCCAGTACATTGAGTTCGTTGCCGACCGCTTGC 1028117
Query 117363 T 117363
|
Sbjct 1028118 T 1028118
>seq1
Length=3734243
Score = 122 bits (134), Expect = 9e-23
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || ||||||||||| |||||||| | || ||||||
Sbjct 2696101 AAGATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAAAGT 2696160
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | | | | ||| || ||| |||||||||||| ||||| | ||
Sbjct 2696161 TCGGATACGATCGATGCCGTTAAGAGCAAGATTGCCGACAAAGAGGGTATCCCTCCTGAT 2696220
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| |||||||| | ||| ||||| ||| |||| || | || || ||| ||||||
Sbjct 2696221 CAGCAGCGACTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACGCTCTCGGACTAC 2696280
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGCT 40921
|||||||| |||||| | || || || |||||| | ||| | | || || ||||
Sbjct 2696281 AACATCCAAAAGGAGTCTACACTTCACCTAGTGCTTCGCCTTCGTGGTGGTGGCT 2696335
>seq2
Length=2224469
Score = 105 bits (116), Expect = 7e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| |||||||| ||||| || |||| || || |
Sbjct 961341 ATGCAGATTTTCGTGAAGACGCTAACGGGCAAGACCATTACGCTCGAGGTTGAGAGTTCG 961400
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || ||| ||| || |||||||||||| | ||||||
Sbjct 961401 GATACCATTGACGCTGTCAAGAGCAAGATTGCCGATAAGGAGGGCATCCCCCCTGACCAG 961460
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| || ||||| ||||| || || | || |||||| ||||||||
Sbjct 961461 CAGCGTCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGACGTACCCTCTCGGACTACAAT 961520
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905
|| || |||||| | || || || || ||| | |||
Sbjct 961521 ATTCAAAAGGAGTCGACTCTACACCTTGTGCTTCGC 961556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219174239040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |