Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq1 109 5e-19 seq3 89.7 4e-13 >seq2 Length=2224469 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| |||||||| ||||| || | || || |||||| Sbjct 961550 CACAAGGTGTAGAGTCGACTCCTTTTGAATATTGTAGTCCGAGAGGGTACGTCCATCCTC 961491 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| ||||||||||| || || || ||||||||||| || | Sbjct 961490 TAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTATCGGC 961431 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || || | ||| |||| ||||| ||||||| || | || || Sbjct 961430 AATCTTGCTCTTGACAGCGTCAATGGTATCCGAACTCTCAACCTCGAGCGTAATGGTCTT 961371 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| || || || || || ||||||||||| ||| Sbjct 961370 GCCCGTTAGCGTCTTCACGAAAATCTGCATCGCT 961337 >seq1 Length=3734243 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | ||||||||| ||||| |||||||| || | || || ||| || Sbjct 2696313 CACTAGGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCCGAGAGCGTACGGCCATCTTC 2696254 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| | ||||| ||||||||||| ||||| || ||||| ||||| | Sbjct 2696253 CAACTGCTTGCCGGCGAAAATGAGTCGCTGCTGATCAGGAGGGATACCCTCTTTGTCGGC 2696194 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||||| |||| || |||| || |||||||| | || | || || Sbjct 2696193 AATCTTGCTCTTAACGGCATCGATCGTATCCGAACTTTCGACCTCAAGAGTGATGGTCTT 2696134 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || ||||||||||| Sbjct 2696133 GCCCGTGAGGGTCTTCACGAAAATCTGCAT 2696104 >seq3 Length=2099697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45086 ATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAAT 45145 ||||||| |||||| | |||| || || |||| ||| | |||| ||||| || || Sbjct 1028018 ATCGAGAAGGAATTCCTCACTGATGCGCTCCCCGTATCTCTTTTGGGCATGAATGCAAAG 1028077 Query 45146 ATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCC 45205 | ||| | ||||||||||||| || ||||| || | ||||| | ||||| Sbjct 1028078 CTCATGTGCCAGTACATTGAGTTCGTTGCCGACCGCTTGCTCGTGGCTCTTGGCCATCCC 1028137 Query 45206 AAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAA 45265 ||| ||||| || |||||| || || || ||| | ||||| ||| | | ||| || Sbjct 1028138 AAGGTGTACAGCGTTGCGAACCCCTTTGATTTCATGGAGAATATCTCGCTTGCGGGTAAG 1028197 Query 45266 ACTAAtttttttGAGAAACGCGTC 45289 || || || |||||||| || ||| Sbjct 1028198 ACCAACTTCTTTGAGAAGCGAGTC 1028221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830378850768