Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 223 5e-53 seq1 138 2e-27 >seq3 Length=2099697 Score = 223 bits (246), Expect = 5e-53 Identities = 580/870 (67%), Gaps = 27/870 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || ||||| |||||||| ||||| |||||| | ||| || || || ||||||| || Sbjct 1027364 CTATTTCCTATCAGGTACCATGAAATTTGGCAGGCGTATAAGAAAGCGGAGGCCTCTTTC 1027423 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | ||||||| | ||||| ||||| || | || ||||| | ||| ||| Sbjct 1027424 TGGACTGCCGAAGAGATTGATCTCGGTAAGGATTTGAATGACTGGGACAATCGCATGAAC 1027483 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||||| || || ||| | | | || || || || | |||||| || || Sbjct 1027484 AAGGATGAGCGATTCTTCATTTCGAATGTACTCGCATTTTTCGCAGCCTCCGACGGCATT 1027543 Query 125175 GTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 |||||||| || ||| |||| || |||||| || || || || |||| ||| Sbjct 1027544 GTCAACGAGAACCTGGTTGAG-CGGTTCTCTGGTGAAGTGCAAATCCCTGAGGCAAAGTG 1027602 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||||| ||||||||||||||||| ||||| | |||||||| | ||||| ||||| Sbjct 1027603 TTTTTATGGATTCCAAATCATGATGGAGAATATTCACTCGGAGACTTACTCACTCCTGAT 1027662 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 ||||| || ||| |||||| || ||| || || || || || || || | Sbjct 1027663 TGACACATATATTAAGGATCCGAAAGAGGCACAGCACCTGTTCAATGCCATTGAGACCAT 1027722 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 || | || |||||||||| | |||| | | || |||||| ||| | |||| | Sbjct 1027723 TCCCTGCATTGCTAAAAAGGCTAAGTGGGCGTTGCGCTGGATCAGTGATCGCGAGTCCAC 1027782 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 | || || | || ||||| || || || || ||||| |||||||| || || ||| Sbjct 1027783 ATTTGCAGAGCGCCTTGTGGCGTTTGCTGCTGTTGAGGGGATCTTCTTCTCAGGCTCTTT 1027842 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 || |||||| ||||| ||||||||||| |||||||| || || || ||| || Sbjct 1027843 CGCAAGCATCTTCTGGCTAAAGAAGCGCGGCCTCATGCCTGGTCTTACATTTTCTAATGA 1027902 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT 125592 | | || ||||| || || || | || ||| ||||| || |||| |||| || Sbjct 1027903 GCTAATTTCTCGCGATGAAGGTATGCATACTGATTTTGCTTGCCTCTTGTTCACGCACCT 1027962 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAA---CATTGTAACCGATG 125649 || || || || ||| || || ||||| | ||| | || || | Sbjct 1027963 ---TGAAAACC----GCCCGTC--GCG-TG---AGATCATCGAGCGGATTATCACTGAGG 1028009 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 | || ||| || | || || || || || | || || || | | ||||||| Sbjct 1028010 CGGTTGAGATCGAGAAGGAATTCCTCACTGATGCGCTCCCCGTATCTCTTTTGGGCATGA 1028069 Query 125710 ACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 | ||| ||||| |||||| ||||||| ||||| || || || || || || || | Sbjct 1028070 A-TGCAAAGCTCATGTGCCAGTACATTGAGTTCGTTGCCGACCG-CT--TGCTCGTGGCT 1028125 Query 125769 ATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||||| | |||| | |||| || ||| ||||||||||||||| | || || Sbjct 1028126 CTTGGCCATCCCAAGGTGTACAGCGTTGCGAACCCCTTTGATTTCATGGAGAATATCTCG 1028185 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || | ||||||||||||||| || |||||| Sbjct 1028186 CTTGCGGGTAAGACCAACTTCTTTGAGAAG 1028215 >seq1 Length=3734243 Score = 138 bits (152), Expect = 2e-27 Identities = 347/518 (67%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||||||||| | | || ||| | |||| ||| | | |||||||| | | || Sbjct 742160 AACAAACGGTACCAGCAATGGTATTTTGCCCATGTTGCGTGTGTACAATAATACAGCTCG 742101 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| || ||||||||||| || || || ||| | || | || || || || || Sbjct 742100 ATACGTGGATCAAGGCGGCAATAAGCGCCCGGGTGCTTTCGCAATTTATTTAGAGCCGTG 742041 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||| | ||||| ||||| ||||| || |||| ||||| ||| || ||| || Sbjct 742040 GCATGATGACGTATTTGAGTTTATTGATTTGCGGAAAAATCATGGAAAAGAGGAGATTCG 741981 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || || || ||| || ||| | ||||||||||||||||||||||| || || Sbjct 741980 TGCGCGAGATTTATTCCTTGCTCTATGGATTCCAGATTTGTTCATGAAGCGCGTTAAAGA 741921 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCC---CGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | ||| | |||| || ||||| || ||| | || || ||||| |||| | Sbjct 741920 GGATGGAGATTGGACTCTTATGTGTCCAAGCGAAT-GT--CCTGGTCTAGCCGACGTGTA 741864 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAG--AGGGCCGATACGTGAGA 97160 || || || || |||| |||||| |||||| ||| ||| ||| | Sbjct 741863 TGGTGACGAATTCGAGGAGCTGTACACAAAGTACGAG-AAGCTAGGTAAAGGTCGTCGTA 741805 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAAC 97219 | | || | |||| | |||||||| | || | || ||| || || ||||| || | Sbjct 741804 CCA-TCAAGGCACAAAAACTGTGGTACGCAATTCTTGA-AGCCCAAACTGAGACAGGTAA 741747 Query 97220 TCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCAC 97279 |||||| || |||||||||||| | | ||||| || |||||| ||||||| || Sbjct 741746 TCCGTATATGCTCTACAAGGATGCTGCCAATCGTAAGTCTAACCAAAAGAACTTGGGTAC 741687 Query 97280 CATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGT 97317 |||||| | |||||||| ||| || ||||| |||| Sbjct 741686 AATCAAGAGTTCCAATCTTTGCTGCGAGATTGTCGAGT 741649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059162947040