Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 113 9e-20 seq2 89.7 1e-12 >seq3 Length=2099697 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 || ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| ||| | Sbjct 1704395 GTTATTGGCCCCAACGGTGCTGGTAAGTCGACGCTAATCAATGTCCTTACTGGTGAGCTC 1704336 Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292 | | ||| || |||| | |||| ||| || || || |||||| ||| Sbjct 1704335 TTGCCGACTATAGGTGAGGTTTACACGCATGAAAACTGCCGTATTGCCTACGTCAAGCAG 1704276 Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352 ||||||||| |||||||| || ||||| || | |||||||| | | |||||||||||| Sbjct 1704275 CACGCTTTCGCACACATCGATAATCACCTCGATAAGACTCCTAGCGAGTACATTCAGTGG 1704216 Query 280353 CG 280354 || Sbjct 1704215 CG 1704214 Score = 109 bits (120), Expect = 1e-18 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGC-A 280760 ||||||| |||||||| |||||||| || |||||||||||||| ||||| | | ||| Sbjct 1703821 CTCACTCCCGCATTCGTGGTCTTTCAGGTGGCCAGAAGGTCAAGCTTGTATTGGCAGCGT 1703762 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 || | ||||||| || ||||| ||||| || || ||||||||||||||||| || ||| Sbjct 1703761 GCAC-ATGGCAACGTCCGCACGTTATCGTCCTTGATGAGCCTACCAACTATCTTGATCGC 1703703 Query 280821 GA 280822 || Sbjct 1703702 GA 1703701 Score = 100 bits (110), Expect = 6e-16 Identities = 314/473 (66%), Gaps = 14/473 (3%) Strand=Plus/Minus Query 251525 TCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCT 251584 |||| ||||||| || || || || || || || ||||| || | ||| ||| Sbjct 1028249 TCATGACACCTGCTTTCTGGTAGTCCGAGACTCGCTTCTCAAAGAAGTTGGTCTTACCCG 1028190 Query 251585 CCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGC 251644 | || ||||| ||||||||| || |||||||| | | ||||| ||||||||||| Sbjct 1028189 CAAGCGAGATATTCTCCATGAAATCAAAGGGGTTCGCAACGCTGTACACCTTGGGATGGC 1028130 Query 251645 CAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704 |||| || |||| | |||||| || || ||||| | ||||| | ||| || | | | Sbjct 1028129 CAAGAGCCACGAGCAAGCGGTCGGCAACGAACTCAATGTACTGGCACATGAGCTTTGCAT 1028070 Query 251705 TCATGCCAATCATACGACA-AGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763 ||||||| | | | || | || | || ||| || ||||||||| ||| | |||| Sbjct 1028069 TCATGCCCAAAAGA-GATACGGGGAGCGCATCAGTGAGGAATTCCTTCTCGATCTCAACC 1028011 Query 251764 GCCTCCTCCACAATTGCCTTCACCTG-TGCCA-GAGACAGCTTGTTCTCCAGCTTTGAGT 251821 ||||| | ||| || | || | || | ||| | ||| || || | | | Sbjct 1028010 GCCTCAGTGATAATCCGCTCGA--TGATCTCACGCGACGGGCGGTTTTCAAGGTGCGTGA 1027953 Query 251822 ACAGGA-GCTCGCCAAA-CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879 ||| || || || ||| | || |||| ||| || |||||| || | ||| || || Sbjct 1027952 ACAAGAGGCAAGCAAAATCAGT--ATGCATACCTTCATCGCGAGAAATTAGCTCATTAGA 1027895 Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGC--GCAAAAGGAT 251937 | || |||||||| | || || ||| | |||||||||| ||| || ||| || Sbjct 1027894 AAATGTAAGACCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGA-TGCTTGCGAAA-GAG 1027837 Query 251938 CCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA 251990 || ||||| | | ||||| ||| | | || ||||||||||| ||||| Sbjct 1027836 CCTGAGAAGAAGATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAA 1027784 >seq2 Length=2224469 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 280149 GTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTA 280208 || ||| | | ||| ||| ||| | |||| || || ||||| ||||| || ||||| Sbjct 1445991 GTCTCTCTCAGCTCGCGGGTTGCCATTCTTGGCCCGAACGGTGCCGGTAAATCCACCCTC 1446050 Query 280209 ATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAAC 280268 || ||| | ||||||| ||||| | | |||||| | || ||||||||| || Sbjct 1446051 ATTAAATTATTGACTGGTGAGACTATACCGAATGAGGGTACGGTGGAGAAGCATCCAAAT 1446110 Query 280269 ATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATG 280328 |||| || | ||| | || || || ||| |||| ||| ||||| | ||| || | | Sbjct 1446111 CTGCGCATTGGGTACATTGCCCAACATGCTCTCCAGCACGTCGAGCAGCACAAAGAGAAG 1446170 Query 280329 ACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||| | || ||| | ||||||||||| Sbjct 1446171 ACTCCGAGTCAGTACTTGCAGTGGCGCTA 1446199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836747323364