Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016-
03-01] 4 sequences; 8,470,812 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 113 9e-20
seq2 89.7 1e-12
>seq3
Length=2099697
Score = 113 bits (124), Expect = 9e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
|| ||||| ||||| ||||| |||||||| || |||||||| ||||| ||||| ||| |
Sbjct 1704395 GTTATTGGCCCCAACGGTGCTGGTAAGTCGACGCTAATCAATGTCCTTACTGGTGAGCTC 1704336
Query 280233 CAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAG 280292
| | ||| || |||| | |||| ||| || || || |||||| |||
Sbjct 1704335 TTGCCGACTATAGGTGAGGTTTACACGCATGAAAACTGCCGTATTGCCTACGTCAAGCAG 1704276
Query 280293 CACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGG 280352
||||||||| |||||||| || ||||| || | |||||||| | | ||||||||||||
Sbjct 1704275 CACGCTTTCGCACACATCGATAATCACCTCGATAAGACTCCTAGCGAGTACATTCAGTGG 1704216
Query 280353 CG 280354
||
Sbjct 1704215 CG 1704214
Score = 109 bits (120), Expect = 1e-18
Identities = 99/122 (81%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGC-A 280760
||||||| |||||||| |||||||| || |||||||||||||| ||||| | | |||
Sbjct 1703821 CTCACTCCCGCATTCGTGGTCTTTCAGGTGGCCAGAAGGTCAAGCTTGTATTGGCAGCGT 1703762
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
|| | ||||||| || ||||| ||||| || || ||||||||||||||||| || |||
Sbjct 1703761 GCAC-ATGGCAACGTCCGCACGTTATCGTCCTTGATGAGCCTACCAACTATCTTGATCGC 1703703
Query 280821 GA 280822
||
Sbjct 1703702 GA 1703701
Score = 100 bits (110), Expect = 6e-16
Identities = 314/473 (66%), Gaps = 14/473 (3%)
Strand=Plus/Minus
Query 251525 TCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCT 251584
|||| ||||||| || || || || || || || ||||| || | ||| |||
Sbjct 1028249 TCATGACACCTGCTTTCTGGTAGTCCGAGACTCGCTTCTCAAAGAAGTTGGTCTTACCCG 1028190
Query 251585 CCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGC 251644
| || ||||| ||||||||| || |||||||| | | ||||| |||||||||||
Sbjct 1028189 CAAGCGAGATATTCTCCATGAAATCAAAGGGGTTCGCAACGCTGTACACCTTGGGATGGC 1028130
Query 251645 CAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGT 251704
|||| || |||| | |||||| || || ||||| | ||||| | ||| || | | |
Sbjct 1028129 CAAGAGCCACGAGCAAGCGGTCGGCAACGAACTCAATGTACTGGCACATGAGCTTTGCAT 1028070
Query 251705 TCATGCCAATCATACGACA-AGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763
||||||| | | | || | || | || ||| || ||||||||| ||| | ||||
Sbjct 1028069 TCATGCCCAAAAGA-GATACGGGGAGCGCATCAGTGAGGAATTCCTTCTCGATCTCAACC 1028011
Query 251764 GCCTCCTCCACAATTGCCTTCACCTG-TGCCA-GAGACAGCTTGTTCTCCAGCTTTGAGT 251821
||||| | ||| || | || | || | ||| | ||| || || | | |
Sbjct 1028010 GCCTCAGTGATAATCCGCTCGA--TGATCTCACGCGACGGGCGGTTTTCAAGGTGCGTGA 1027953
Query 251822 ACAGGA-GCTCGCCAAA-CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879
||| || || || ||| | || |||| ||| || |||||| || | ||| || ||
Sbjct 1027952 ACAAGAGGCAAGCAAAATCAGT--ATGCATACCTTCATCGCGAGAAATTAGCTCATTAGA 1027895
Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGC--GCAAAAGGAT 251937
| || |||||||| | || || ||| | |||||||||| ||| || ||| ||
Sbjct 1027894 AAATGTAAGACCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGA-TGCTTGCGAAA-GAG 1027837
Query 251938 CCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA 251990
|| ||||| | | ||||| ||| | | || ||||||||||| |||||
Sbjct 1027836 CCTGAGAAGAAGATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAA 1027784
>seq2
Length=2224469
Score = 89.7 bits (98), Expect = 1e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 280149 GTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTA 280208
|| ||| | | ||| ||| ||| | |||| || || ||||| ||||| || |||||
Sbjct 1445991 GTCTCTCTCAGCTCGCGGGTTGCCATTCTTGGCCCGAACGGTGCCGGTAAATCCACCCTC 1446050
Query 280209 ATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAAC 280268
|| ||| | ||||||| ||||| | | |||||| | || ||||||||| ||
Sbjct 1446051 ATTAAATTATTGACTGGTGAGACTATACCGAATGAGGGTACGGTGGAGAAGCATCCAAAT 1446110
Query 280269 ATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATG 280328
|||| || | ||| | || || || ||| |||| ||| ||||| | ||| || | |
Sbjct 1446111 CTGCGCATTGGGTACATTGCCCAACATGCTCTCCAGCACGTCGAGCAGCACAAAGAGAAG 1446170
Query 280329 ACTCCTAACCAATACATTCAGTGGCGCTA 280357
||||| | || ||| | |||||||||||
Sbjct 1446171 ACTCCGAGTCAGTACTTGCAGTGGCGCTA 1446199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836747323364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |