Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016-
03-01] 4 sequences; 8,470,812 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 1e-29
seq1 89.7 8e-13
>seq3
Length=2099697
Score = 145 bits (160), Expect = 1e-29
Identities = 528/823 (64%), Gaps = 19/823 (2%)
Strand=Plus/Minus
Query 159629 TTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT 159688
|||| ||| | ||| || |||||| || ||||||||||| ||| | | || ||
Sbjct 1028235 TTCTGGTAGTCCGAGACTCGCTTCTCAAAGAAGTTGGTCTTACCCGCAAGCGAGATATTC 1028176
Query 159689 TCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGC 159748
|||||||| | || |||||| ||| || ||| ||| || |||||| | |||
Sbjct 1028175 TCCATGAAATCAAAGGGGTTCGCAACGCTGTACACCTTGGGATGGCCAAGAGCCACGAGC 1028116
Query 159749 AACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC 159808
|| | ||| || || || || ||||| ||||| ||| || || |||| ||
Sbjct 1028115 AAGCGGTCGGCAACGAACTCAATGTACTGGCACATGAGCTTTGCATTCATGCCCAAAAGA 1028056
Query 159809 CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC 159868
||||||||||| || | || || |||||||| ||||| ||||| || || | ||||
Sbjct 1028055 GATACGGGGAGCGCATCAGTGAGGAATTCCTTCTCGATCTCAACCGCCTCAGTGATAATC 1027996
Query 159869 TGCGAGACACGTTCGTACCC------CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922
|| || | || || | ||| || | || ||| | | |||| ||||
Sbjct 1027995 CGCTCGAT--GATCTCACGCGACGGGCGGTTTTC----AAGGTG---CGTGAACAAGAGG 1027945
Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982
|| ||||| || |||| || || || ||||| || | ||| || || | | ||
Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885
Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042
|| ||||||| || ||| || ||||| || ||| || |||| || || |||
Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825
Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102
|||||||| || || ||||||||||| || | ||| |||| | || | | ||| |
Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765
Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162
|||| | ||||| | |||||| || || ||||| || ||| ||| | ||| ||
Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705
Query 160163 AACA--ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220
|||| |||| | ||| ||| |||||| || || ||||||| |||||
Sbjct 1027704 AACAGGTGCTGTGC--CTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAAG 1027647
Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280
| || | ||| | ||| || || || || || || ||| | | ||||| |
Sbjct 1027646 TCTCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGGA 1027587
Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340
||||| || | ||||| | | |||| || | || || | ||||||| ||| |
Sbjct 1027586 TTTGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTG 1027527
Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400
| || || || | || | || ||||| || ||| || ||||| | | || ||||
Sbjct 1027526 CGAAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATCCTTGTTCATGCGATTGTCCC 1027467
Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
||| ||| || | | | ||||| |||||| || ||||
Sbjct 1027466 AGTCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCA 1027424
>seq1
Length=3734243
Score = 89.7 bits (98), Expect = 8e-13
Identities = 165/234 (71%), Gaps = 11/234 (5%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTA 203892
||||| || || |||||||| || |||| ||| || ||||| | | || || ||
Sbjct 740679 TCTTGATCAACAGTGAACTGGATTGGCG----CGGAAGCTGCCTGAGTGCGCAAGTAATA 740734
Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952
||| ||||| || || ||||| ||| || || | ||||||| | ||| |||| ||
Sbjct 740735 CATACCGGTTTTGAGACCCTTAGACCAACCATAAAAGTGCATGCTGGTCAGCTTGCCCAT 740794
Query 203953 -GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011
|| || || || |||| || || ||||| ||| ||| ||||| || | || ||||
Sbjct 740795 TGTAGGACTCTGC-ATGTATATATTGAGAGATTGGGATTGATCGATAAACGCGGCACGAT 740853
Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065
|||||||||| | || || | ||||| ||||||||| || |||||| |||
Sbjct 740854 CTGCGGCCATGTCAATGATCGCTTTCTGGCTAATCTCCCAGACTGTCTTGTACA 740907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795155160242240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |