Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 145 1e-29 seq1 89.7 8e-13 >seq3 Length=2099697 Score = 145 bits (160), Expect = 1e-29 Identities = 528/823 (64%), Gaps = 19/823 (2%) Strand=Plus/Minus Query 159629 TTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT 159688 |||| ||| | ||| || |||||| || ||||||||||| ||| | | || || Sbjct 1028235 TTCTGGTAGTCCGAGACTCGCTTCTCAAAGAAGTTGGTCTTACCCGCAAGCGAGATATTC 1028176 Query 159689 TCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGC 159748 |||||||| | || |||||| ||| || ||| ||| || |||||| | ||| Sbjct 1028175 TCCATGAAATCAAAGGGGTTCGCAACGCTGTACACCTTGGGATGGCCAAGAGCCACGAGC 1028116 Query 159749 AACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC 159808 || | ||| || || || || ||||| ||||| ||| || || |||| || Sbjct 1028115 AAGCGGTCGGCAACGAACTCAATGTACTGGCACATGAGCTTTGCATTCATGCCCAAAAGA 1028056 Query 159809 CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATC 159868 ||||||||||| || | || || |||||||| ||||| ||||| || || | |||| Sbjct 1028055 GATACGGGGAGCGCATCAGTGAGGAATTCCTTCTCGATCTCAACCGCCTCAGTGATAATC 1027996 Query 159869 TGCGAGACACGTTCGTACCC------CGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGG 159922 || || | || || | ||| || | || ||| | | |||| |||| Sbjct 1027995 CGCTCGAT--GATCTCACGCGACGGGCGGTTTTC----AAGGTG---CGTGAACAAGAGG 1027945 Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 || ||||| || |||| || || || ||||| || | ||| || || | | || Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 || ||||||| || ||| || ||||| || ||| || |||| || || ||| Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 |||||||| || || ||||||||||| || | ||| |||| | || | | ||| | Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162 |||| | ||||| | |||||| || || ||||| || ||| ||| | ||| || Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705 Query 160163 AACA--ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 |||| |||| | ||| ||| |||||| || || ||||||| ||||| Sbjct 1027704 AACAGGTGCTGTGC--CTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAAG 1027647 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 | || | ||| | ||| || || || || || || ||| | | ||||| | Sbjct 1027646 TCTCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGGA 1027587 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||||| || | ||||| | | |||| || | || || | ||||||| ||| | Sbjct 1027586 TTTGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTG 1027527 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 | || || || | || | || ||||| || ||| || ||||| | | || |||| Sbjct 1027526 CGAAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATCCTTGTTCATGCGATTGTCCC 1027467 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||| ||| || | | | ||||| |||||| || |||| Sbjct 1027466 AGTCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCA 1027424 >seq1 Length=3734243 Score = 89.7 bits (98), Expect = 8e-13 Identities = 165/234 (71%), Gaps = 11/234 (5%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAAT-GGCGTTCACGGCAG--GCCTGCTT-CTCAGATAGTA 203892 ||||| || || |||||||| || |||| ||| || ||||| | | || || || Sbjct 740679 TCTTGATCAACAGTGAACTGGATTGGCG----CGGAAGCTGCCTGAGTGCGCAAGTAATA 740734 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| ||||| || || ||||| ||| || || | ||||||| | ||| |||| || Sbjct 740735 CATACCGGTTTTGAGACCCTTAGACCAACCATAAAAGTGCATGCTGGTCAGCTTGCCCAT 740794 Query 203953 -GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 || || || || |||| || || ||||| ||| ||| ||||| || | || |||| Sbjct 740795 TGTAGGACTCTGC-ATGTATATATTGAGAGATTGGGATTGATCGATAAACGCGGCACGAT 740853 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||||||||| | || || | ||||| ||||||||| || |||||| ||| Sbjct 740854 CTGCGGCCATGTCAATGATCGCTTTCTGGCTAATCTCCCAGACTGTCTTGTACA 740907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155160242240