Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 233 2e-56 seq1 104 2e-17 >seq3 Length=2099697 Score = 233 bits (258), Expect = 2e-56 Identities = 553/823 (67%), Gaps = 17/823 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || ||| | | || || | ||| ||||| |||||||| Sbjct 1028214 TTCTCAAAGAAGTTGGTCTTACCCGCAAGCGAGATATTCTCCATGAAATCAAAGGGGTTC 1028155 Query 132685 GCTGTGTTGTAGTGCTTGG--TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACT 132742 || | |||| ||||| || | | || | ||||||| | |||||| ||||||| Sbjct 1028154 GCAACGCTGTACACCTTGGGATGGCCAAGAG--CCACGAGCAAGCGGTCGGCAACGAACT 1028097 Query 132743 CGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 | ||||| || ||||| | || ||| | | | |||| ||| || || ||||| || Sbjct 1028096 CAATGTACTGGCACATGAGCTTTGCATTCATG-CCCAAAAGAGATACGGGGAGCGCATCA 1028038 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC-CGC 132860 ||||| || | |||||| | ||||| || |||| || | | | | | ||| Sbjct 1028037 GTGAGGAATTCCTTCTCGATCTCAACCGCCTCAGTGATAATCCGCTCGATGATCTCACGC 1027978 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 | ||| ||| | | ||| |||||| | ||||||||| || ||||| || || Sbjct 1027977 GACGGGCGGTTTT-CAAGGTGCGTGAACAAGAGGCAAGCAAAATCAGTATGCATACCTTC 1027919 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | ||||| || || || || || | || |||||||||||||| || || || Sbjct 1027918 ATCGCGAGAAATTAGCTCATTAGAAAATGTAAGACCAGGCATGAGGCCGCGCTTCTTTAG 1027859 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || ||| |||||| ||| || ||||||| ||||| || || || || ||||| Sbjct 1027858 CCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAGATCCCCTCAACAGCAGCAAACGCCAC 1027799 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC-GATCCAGCGCAGCGCCCATTCGGCCT 133099 |||||||| | || |||| || | | | ||||||||||| |||||| | |||| Sbjct 1027798 AAGGCGCTCTGCAAATGTGGACTC-GCGATCACTGATCCAGCGCAACGCCCACTTAGCCT 1027740 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGG 133159 ||| | ||| || || || || ||||| || |||| | || ||||| | || Sbjct 1027739 TTTTAGCAATGCAGGGAATGGTCTCAATGGCATTGAACAGGTGCTGTGCCTCTTTC--GG 1027682 Query 133160 AAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217 | | | || ||||| || ||| || || | |||||||| | |||||||| Sbjct 1027681 ATCCTTAATATATGTGTCAATCAGGAGTGAGTAAGTCTCCGAGTGAATATTCTCCATCAT 1027622 Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| || || ||||| ||| ||||| | |||||||| || ||| ||||| Sbjct 1027621 GATTTGGAATCCATAAAAACACTTTGCCTCAGGGATTTGCACTTCACCAGAGAACCGCTC 1027562 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||| ||||||||| ||| |||||||| || || || | | || Sbjct 1027561 AACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTGCGAAAAATGCGAGTACATTCGAAAT 1027502 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| ||||| | | ||||| ||| |||||||| | ||||| || || Sbjct 1027501 GAAGAATCGCTCATCCTTGTTCATGCGATTGTCCCAGTCATTCAAATCCTTACCGAGATC 1027442 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 | ||| ||| | ||||| || || ||||| ||||| || ||| Sbjct 1027441 AATCTCTTCGGCAGTCCAGAAAGAGGCCTCCGCTTTCTTATAC 1027399 >seq1 Length=3734243 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| Sbjct 2696101 AAGATGCAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAAAGT 2696160 Query 38301 ACCGACAGCGTGCAAACGCTTAA-AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| || || | | | |||||||||||| || || | || Sbjct 2696161 TCGGATACGATCGATGCCGTTAAGAGCAAGATTGC-CGACAAAGAGGGTATCCCTCCTGA 2696219 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||||| ||| ||||| ||| |||| || | || || ||| ||||| Sbjct 2696220 TCAGCAGCGACTCATTTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACGCTCTCGGACTA 2696279 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||||||| | || || || | ||||| || Sbjct 2696280 CAACATCCAAAAGGAGTCTACACTTCACCTAGTGCTTCG 2696318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172774991360