Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016-
03-01] 4 sequences; 8,470,812 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 161 1e-34
seq3 141 1e-28
>seq1
Length=3734243
Score = 161 bits (178), Expect = 1e-34
Identities = 307/452 (68%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164
||||| || || || | || ||| ||||| || |||||||| | ||| |||||||||
Sbjct 741828 TCGTACTTTGTGTACAGCTCCTCGAATTCGTCACCATACACGTCGGCTAGACCAGGACAT 741887
Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224
|| | |||||||| | | |||||| |||| | ||| || | |||| || | ||||
Sbjct 741888 TCGCTTGGACACATAAGAGTCCAATCTCCATCCTCTTTAACGCGCTTCATGAACAAATCT 741947
Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT 48284
|| ||||| ||||| | |||||||| | | | | || || || ||| ||| |
Sbjct 741948 GGAATCCATAGAGCAAGGAATAAATCTCGCGCACGAATCTCCTCTTTTCCATGATTTTTC 742007
Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344
| |||| ||| || | || ||| ||||||| || |||||||| ||||| | ||
Sbjct 742008 CGCAAATCAATAAACTCAAATACGTCATCATGCCACGGCTCTAAATAAATTGCGAAAGCA 742067
Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404
|| || || ||||| || |||||||| | |||| || ||||| || || || | |||
Sbjct 742068 CCCGGGCGCTTATTGCCGCCTTGATCCACGTATCGAGCTGTATTATTGTACACACGCAAC 742127
Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464
|| || | ||||||||| |||| || ||||| | |||||| || |||| |
Sbjct 742128 ATGGGCAAAATACCATTGCTGGTACCGTTTGTTCCAGCAATATATGAGCCTGTAGCGCGA 742187
Query 48465 ATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524
|| || ||| | ||| ||||| || || ||||| || || ||||| ||
Sbjct 742188 ATGTTGTGAATATTGAGACCAATACCCCCAGCAGACTTAGAGATGAGCGCACAAGTCTTC 742247
Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATC 48556
| ||||| ||||| ||||| || ||||||
Sbjct 742248 AACGTATCGTAAATCCCTTCAATTGAATCATC 742279
>seq3
Length=2099697
Score = 141 bits (156), Expect = 1e-28
Identities = 385/588 (65%), Gaps = 5/588 (1%)
Strand=Plus/Minus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||||||| ||| | || || || | | || | |||||||||||||| | |
Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080
|||||||| || || | || |||| |||||| || || || || || || |||||
Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825
Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140
|| || || || || ||||| || || || | ||| || | | | || || |
Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765
Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200
||||| || ||||| | |||||| || | || || || ||||| || | |||
Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705
Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260
|| || | | ||| | | ||| |||| ||||| || |||| | ||| |
Sbjct 1027704 AACAGGTGCTGTGCCTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAAGTC 1027645
Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320
|| || |||||||| || || || || ||||| |||||||| |||| || | ||
Sbjct 1027644 TCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGGATT 1027585
Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380
|| ||||||| | | || | || |||| || || || || || || || |||||
Sbjct 1027584 TGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTGCG 1027525
Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCA 19436
|||||||| | ||||| ||| || | ||||| ||| ||| | | |||
Sbjct 1027524 AAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATC-CTTGTTCATGCGATTGTCCCA 1027466
Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496
||||| | ||| ||| | ||| | ||||| | ||||| ||||| ||||| |||||
Sbjct 1027465 GTCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCAGAAAGAGGCCTCCGCTTT 1027406
Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
|||||| | ||| || ||| | || |||||||||| |||||
Sbjct 1027405 CTTATACGCCTGCCAAATTTCATGGTACCTGATAGGAAATAGTACAAA 1027358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108771894560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |