Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 161 1e-34 seq3 141 1e-28 >seq1 Length=3734243 Score = 161 bits (178), Expect = 1e-34 Identities = 307/452 (68%), Gaps = 0/452 (0%) Strand=Plus/Plus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 ||||| || || || | || ||| ||||| || |||||||| | ||| ||||||||| Sbjct 741828 TCGTACTTTGTGTACAGCTCCTCGAATTCGTCACCATACACGTCGGCTAGACCAGGACAT 741887 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 || | |||||||| | | |||||| |||| | ||| || | |||| || | |||| Sbjct 741888 TCGCTTGGACACATAAGAGTCCAATCTCCATCCTCTTTAACGCGCTTCATGAACAAATCT 741947 Query 48225 GGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT 48284 || ||||| ||||| | |||||||| | | | | || || || ||| ||| | Sbjct 741948 GGAATCCATAGAGCAAGGAATAAATCTCGCGCACGAATCTCCTCTTTTCCATGATTTTTC 742007 Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344 | |||| ||| || | || ||| ||||||| || |||||||| ||||| | || Sbjct 742008 CGCAAATCAATAAACTCAAATACGTCATCATGCCACGGCTCTAAATAAATTGCGAAAGCA 742067 Query 48345 CCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAAC 48404 || || || ||||| || |||||||| | |||| || ||||| || || || | ||| Sbjct 742068 CCCGGGCGCTTATTGCCGCCTTGATCCACGTATCGAGCTGTATTATTGTACACACGCAAC 742127 Query 48405 ATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTT 48464 || || | ||||||||| |||| || ||||| | |||||| || |||| | Sbjct 742128 ATGGGCAAAATACCATTGCTGGTACCGTTTGTTCCAGCAATATATGAGCCTGTAGCGCGA 742187 Query 48465 ATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTA 48524 || || ||| | ||| ||||| || || ||||| || || ||||| || Sbjct 742188 ATGTTGTGAATATTGAGACCAATACCCCCAGCAGACTTAGAGATGAGCGCACAAGTCTTC 742247 Query 48525 AGGGTATCATAAATTCCTTCTATACTATCATC 48556 | ||||| ||||| ||||| || |||||| Sbjct 742248 AACGTATCGTAAATCCCTTCAATTGAATCATC 742279 >seq3 Length=2099697 Score = 141 bits (156), Expect = 1e-28 Identities = 385/588 (65%), Gaps = 5/588 (1%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||| ||| | || || || | | || | |||||||||||||| | | Sbjct 1027944 CAAGCAAAATCAGTATGCATACCTTCATCGCGAGAAATTAGCTCATTAGAAAATGTAAGA 1027885 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||| || || | || |||| |||||| || || || || || || ||||| Sbjct 1027884 CCAGGCATGAGGCCGCGCTTCTTTAGCCAGAAGATGCTTGCGAAAGAGCCTGAGAAGAAG 1027825 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || || || || || ||||| || || || | ||| || | | | || || | Sbjct 1027824 ATCCCCTCAACAGCAGCAAACGCCACAAGGCGCTCTGCAAATGTGGACTCGCGATCACTG 1027765 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| | |||||| || | || || || ||||| || | ||| Sbjct 1027764 ATCCAGCGCAACGCCCACTTAGCCTTTTTAGCAATGCAGGGAATGGTCTCAATGGCATTG 1027705 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || || | | ||| | | ||| |||| ||||| || |||| | ||| | Sbjct 1027704 AACAGGTGCTGTGCCTCTTTCGGATCCTTAATATATGTGTCAATCAGGAGTGAGTAAGTC 1027645 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || |||||||| || || || || ||||| |||||||| |||| || | || Sbjct 1027644 TCCGAGTGAATATTCTCCATCATGATTTGGAATCCATAAAAACACTTTGCCTCAGGGATT 1027585 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || ||||||| | | || | || |||| || || || || || || || ||||| Sbjct 1027584 TGCACTTCACCAGAGAACCGCTCAACCAGGTTCTCGTTGACAATGCCGTCGGAGGCTGCG 1027525 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG----TATTCCA 19436 |||||||| | ||||| ||| || | ||||| ||| ||| | | ||| Sbjct 1027524 AAAAATGCGAGTACATTCGAAATGAAGAATCGCTCATC-CTTGTTCATGCGATTGTCCCA 1027466 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 ||||| | ||| ||| | ||| | ||||| | ||||| ||||| ||||| ||||| Sbjct 1027465 GTCATTCAAATCCTTACCGAGATCAATCTCTTCGGCAGTCCAGAAAGAGGCCTCCGCTTT 1027406 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||||| | ||| || ||| | || |||||||||| ||||| Sbjct 1027405 CTTATACGCCTGCCAAATTTCATGGTACCTGATAGGAAATAGTACAAA 1027358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108771894560