Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 159 6e-34 seq1 129 1e-24 >seq3 Length=2099697 Score = 159 bits (176), Expect = 6e-34 Identities = 560/864 (65%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| || ||| ||||| || | ||| |||||| ||||||||||||||| Sbjct 1027385 GAAATTTGGCAGGCGTATAAGAAAGCGGAGGCCTCTTTCTGGACTGCCGAAGAGATTGAT 1027444 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATC--CAAAGACGAGCAGCATTTTC-T 25589 || | ||||| || | | |||| || || || ||| || |||| | | ||| | Sbjct 1027445 CTCGGTAAGGATTTGAATGACTGGGACAATCGCATGAACAAGGATGAGC-GATTCTTCAT 1027503 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | | || | ||||| || |||||||| || || || || |||||||| ||| || Sbjct 1027504 TTCGAATGTACTCGCATTTTTCGCAGCCTCCGACGGCATTGTCAACGAGAACCTGGTTGA 1027563 Query 25650 GAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | | ||| | | |||||||| | ||||| |||||||| || || ||||| || Sbjct 1027564 GCGGTTCTCTGGTGAAGTGCAAATCCCTGAGGCAAAGTGTTTTTATGGATTCCAAATCAT 1027623 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 || || ||| | ||||| ||| || | || ||||| || || |||| || Sbjct 1027624 GATGGAGAATATTCACTCGGAGACTTACTCA---CTCCTGATTGACACATATATTAAGGA 1027680 Query 25767 CGTCGCCGAGAGAG----ATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGA 25822 |||| |||| | | ||||| |||||| ||| ||| ||| |||| | Sbjct 1027681 T----CCGAAAGAGGCACAGCACCTGTTCAATGCCATTGAGACCATTCCCTGCATTGCTA 1027736 Query 25823 GGAAGGCGCGGTGGGCCATGAAGTGGATCAAC-AGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| |||||| || ||||||| | | ||| | || |||| ||||| Sbjct 1027737 AAAAGGCTAAGTGGGCGTTGCGCTGGATCAGTGATCGCGAGTCC-ACATTTGCAGAGCGC 1027795 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 || || || ||||||||||| ||||| ||||| ||| || || || || ||||||| Sbjct 1027796 CTTGTGGCGTTTGCTGCTGTTGAGGGGATCTTCTTCTCAGGCTCTTTCGCAAGCATCTTC 1027855 Query 25942 TGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAG 26000 ||||| ||| || || |||||| || || ||| ||||| || ||||| || | Sbjct 1027856 TGGCTAAAGAAGCGCGGCCTCATGCCTGGTCT-TACATTTTCTAATGAGCTAATTTCTCG 1027914 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA 26060 || || ||| | || | |||||||| ||||| | | |||| ||| | || Sbjct 1027915 CGATGAAGGTATGCATACTGATTTTGCTTGCCTCTTGTTCACG---CACCTTGAAAACCG 1027971 Query 26061 ACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 || || | |||| | || | | || |||| ||||| || |||||||||||||| || Sbjct 1027972 CCCGTCGCGTGAGATCATCGAGCGGATTATCACTGAGGCGGTTGAGATCGAGAAGGAATT 1028031 Query 26121 TCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAA--CAACAGACTCATGAGCCAA 26178 | |||||||||| ||| || |||||| |||| Sbjct 1028032 CCTCACTGATGCGCTCCCCGTATCTCTTTTGGGCATGAATGCAA-AG-CTCATGTGCCAG 1028089 Query 26179 TACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGACTCTACAG 26237 |||||||||| || ||||||| |||| ||| | || || | ||| | ||||| Sbjct 1028090 TACATTGAGTTCGTTGCCGACCGCTTGCTCGTGGC-TCTTGGCCATCCCAAGGTGTACAG 1028148 Query 26238 TACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTT 26297 | ||||| || || || ||||| || || ||| | | || |||||||||||||| Sbjct 1028149 CGTTGCGAACCCCTTTGATTTCATGGAGAATATCTCGCTTGCGGGTAAGACCAACTTCTT 1028208 Query 26298 TGAAAAGAGGGTCGGCGACTATCA 26321 ||| ||| | ||| ||||| || Sbjct 1028209 TGAGAAGCGAGTCTCGGACTACCA 1028232 >seq1 Length=3734243 Score = 129 bits (142), Expect = 1e-24 Identities = 282/420 (67%), Gaps = 3/420 (1%) Strand=Plus/Plus Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 |||||| || |||| || || || |||||||| ||||||||||| |||||||||||||| Sbjct 741680 CTTGATTGTACCCAAGTTCTTTTGGTTAGACTTACGATTGGCAGCATCCTTGTAGAGCAT 741739 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCT 221901 | | ||| || ||||| || || | ||||| || ||| |||| | || | Sbjct 741740 ATACGGATTACCTGTCTCAGTTTGGGCTTCAAGAATTGCGTACCACAGTTTTTGTGCCTT 741799 Query 221902 CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTT 221961 | || | || ||| | | ||| || ||| || || ||| || || | Sbjct 741800 GATGGTACGACGACCTTTACC-TAG--CTTCTCGTACTTTGTGTACAGCTCCTCGAATTC 741856 Query 221962 TTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTT 222021 ||||| ||| | ||| | || || ||||| | |||||||| ||| |||| | Sbjct 741857 GTCACCATACACGTCGGCTAGACCAGGACATTCGCTTGGACACATAAGAGTCCAATCTCC 741916 Query 222022 GTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCT 222081 | ||||| || | || |||||| | || || ||||| || || | || | ||||| Sbjct 741917 ATCCTCTTTAACGCGCTTCATGAACAAATCTGGAATCCATAGAGCAAGGAATAAATCTCG 741976 Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGC 222141 | || |||||| || | ||||||| || ||| | ||||||||| | |||| | Sbjct 741977 CGCACGAATCTCCTCTTTTCCATGATTTTTCCGCAAATCAATAAACTCAAATACGTCATC 742036 Query 222142 GTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC 222201 ||||||||||| | ||| | || | ||| || || ||||| ||||| || |||||||| Sbjct 742037 ATGCCACGGCTCTAAATAAATTGCGAAAGCACCCGGGCGCTTATTGCCGCCTTGATCCAC 742096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844753557760