Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wickerhamiella_20domercqiae_20[genbank_20GCA_5F001599275.1_202016- 03-01] 4 sequences; 8,470,812 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 118 3e-21 seq4 104 7e-17 seq1 102 2e-16 >seq2 Length=2224469 Score = 118 bits (130), Expect = 3e-21 Identities = 220/320 (69%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 302562 AATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGT 302621 || |||||| ||||||| ||| | | ||| ||||| ||||||||||| | ||| Sbjct 1891227 AACCATAATATCTTCCAGCGCCTTTACGAGACGCCGCTGGATATAACCAGTCTCGGCTGT 1891286 Query 302622 TTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTC 302681 || || |||||||| || ||||| |||||||| |||||||||| ||||| | ||||| Sbjct 1891287 CTTGACGGCTGTATCGATAAGACCCTCACGACCAGCCATAGCATGAAAGAAGAACTCTTG 1891346 Query 302682 CGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAA---TC 302738 || | || | || | || |||| || || || || || |||||| || Sbjct 1891347 TGGAGTCAAACCACGAAGGTATGAATTCTCCACAAATCCCTTCGATTCAGGCGAATAGTC 1891406 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| | || || || || || || | || || | ||| | | |||||| || Sbjct 1891407 GTCGCGCATG---AAATGAGGTAGTGTACGGTCGACAAATCCGAACGCAATACGCCGACC 1891463 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCC 302856 |||||| |||| || || | ||| | ||||||||||||| || | ||| | |||| Sbjct 1891464 TTCAACGATCTGTTGGCCAACGCAGGCGCTCATCTGCGAAATGTTAATGAATGA--GCCC 1891521 Query 302857 TTGGAGCCAGCATTTACCAT 302876 || || |||||| ||||||| Sbjct 1891522 TTAGACCCAGCACTTACCAT 1891541 Score = 105 bits (116), Expect = 2e-17 Identities = 119/156 (76%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | |||||||| ||| || | ||||||||| Sbjct 1890466 AGAATTTCCTTGAGACGAGGTACACCAAGAGTTACGTT---CTTTGAAGACACACCAGCA 1890522 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 ||||||| || || || || | || |||| ||||||||||| || |||||||| Sbjct 1890523 TAGTGGAATGTGTTTAGCGTCATCTGCGTAGCCGGCTCACCAATCGACTGCGCCGCAATG 1890582 Query 301933 ATACCAACCATTTCTCCTGG-TGCTACAATAGACTT 301967 |||||||||||||| ||||| ||| ||||||| || Sbjct 1890583 ATACCAACCATTTCGCCTGGATGC-GCAATAGATTT 1890617 >seq4 Length=412403 Score = 104 bits (114), Expect = 7e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTC-ATATAGCCGACCCTTGGTGAA-GCGAG 251482 || || ||||| ||| | ||||| || || || ||| || || |||| ||| ||| Sbjct 167119 CATACGTGGACTCTGAATGCATCCGAGGCTTCCATA-AGACGCTCCTTTAGGAACGCGGC 167177 Query 251483 ATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGC 251542 | ||||| |||| |||||||||||||||||||||||| || || ||||| ||||| || | Sbjct 167178 A-GCACCATGTGCAATCATACAATCACGCTCCATTTCTCCAAATCGAAGGCCACCGTCAC 167236 Query 251543 GAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTAT 251602 ||| | ||||||| | || ||||| || ||| | || ||||| | || || Sbjct 167237 GAGAGCGACCCTCGACTGGTTGACGTGTCAGAATCTGCACTGGACCACGAGCACGAGCAT 167296 Query 251603 GTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 | |||||||| |||||||| | | || ||||| ||| || |||| ||| Sbjct 167297 GAATCTTATCATCCACCATATGTCTCAACCGTTGGTAATATGTAGGTCCGAAGAA 167351 Score = 100 bits (110), Expect = 8e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| || ||||||||||||||||| |||||||| |||| || || ||||| ||| Sbjct 167178 AGCACCATGTGCAATCATACAATCACGCTCCATTTCTCCAAATCGAAGGCCACCGTCACG 167237 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAAT 233390 || | ||||| ||||| |||||| || | || | | | |||||| |||||||| || Sbjct 167238 AGAGCGACCCTCGACTGGTTGACGTGTCAGAATCTGCAC-TGGACCACGAGCACGAGCAT 167296 Query 233391 TAATTTTATCTTTAACCATATG 233412 ||| ||||| | |||||||| Sbjct 167297 GAATCTTATCATCCACCATATG 167318 >seq1 Length=3734243 Score = 102 bits (112), Expect = 2e-16 Identities = 409/639 (64%), Gaps = 9/639 (1%) Strand=Plus/Plus Query 155634 TCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGAT 155693 || |||||||| ||||| || || ||||||||||| || || || ||||| |||||||| Sbjct 741651 TCGACAATCTCGCAGCAAAGATTGGAACTCTTGATTGTACCCAAGTTCTTTTGGTTAGAC 741710 Query 155694 TTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCC 155753 |||| || |||||||||||| || || || || | |||||||| | || || || Sbjct 741711 TTACGATTGGCAGCATCCTTGTAGAGCATATACGGATTACCTGTCTCAGTTTGGGCTTCA 741770 Query 155754 AGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTG-TATCTGCCTTCCGACTC 155812 ||||| ||| || | | || || | | | | | | | ||| | ||| Sbjct 741771 AGAATTGCGTACCACAGTTTTTGTGCCTTGA-TGGTACGACGACCTTTACCTAGCTTCTC 741829 Query 155813 ATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTT 155872 || || | |||||| | | || ||||| || || || ||||| || | Sbjct 741830 GTACTTTGTGTACAGCTCCTCGAATTCGTCACCATACACGTCGGCTAGACCAGGACATTC 741889 Query 155873 ATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACT 155932 || || | || | |||| | || | | || |||| ||| || | ||| Sbjct 741890 GCTTGGACACATAAGAGTCCAATCTCCATCCTCTTTAACGCGCTTCATGAACAAATCTGG 741949 Query 155933 CGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCG 155992 ||| | |||| ||| | || | || |||||| | || ||||| ||||| Sbjct 741950 AATCCATAGAGCAAGGAATAAATCTCGCGCACGAATCTCCTCTTTTCCATGATTTTTCCG 742009 Query 155993 TAGCTCTAAGAATTCCTCAATA--TCAGGATGGTGTGGCTCCAGATACATAGCAAAACTA 156050 | || | || || |||| ||| ||| ||||| | ||| || || ||| | Sbjct 742010 CAAATCAATAAACTC--AAATACGTCATCATGCCACGGCTCTAAATAAATTGCGAAAGCA 742067 Query 156051 CC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGC 156107 || | | ||||| || ||||| || || ||||| || |||||| | |||| | | Sbjct 742068 CCCGGGCGCTTATTGCCGCCTTGATCCACGTATCGAGCTGTATTATTGTACACACGCAAC 742127 Query 156108 ATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGA 156167 || || | |||||||||| || || || ||||| ||||| || || | | |||| Sbjct 742128 ATGGGCAAAATACCATTGCTGGTACCGTTTGTTCCAGCAATATATGAGCCTGTAGCGCGA 742187 Query 156168 ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTT 156227 | || ||||||| || |||||||| || | | ||||| || | || || ||| Sbjct 742188 ATGTTGTGAATATTGAGACCAATACCCCCAGCAGACTTAGAGATGAGCGCACAAGTCTTC 742247 Query 156228 ACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 | |||| | |||| |||||||| |||||||| | |||| Sbjct 742248 AACGTATCGTAAATCCCTTCAATTGAATCATCCTGCATT 742286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817524569348